Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMS3P0CW19 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMS3P0CW19 FEM1AP4-201ENST00000443167 1987 ntBASIC19.34■□□□□ 0.69
LIMS3P0CW19 AC004687.1-201ENST00000579003 1625 ntBASIC19.34■□□□□ 0.69
LIMS3P0CW19 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.34■□□□□ 0.69
LIMS3P0CW19 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMS3P0CW19 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMS3P0CW19 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
LIMS3P0CW19 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
LIMS3P0CW19 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.33■□□□□ 0.69
LIMS3P0CW19 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS3P0CW19 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.33■□□□□ 0.69
LIMS3P0CW19 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS3P0CW19 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
LIMS3P0CW19 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS3P0CW19 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS3P0CW19 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS3P0CW19 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LIMS3P0CW19 AC004987.1-201ENST00000428627 508 ntBASIC19.33■□□□□ 0.68
LIMS3P0CW19 ATP5G2P3-201ENST00000429083 425 ntBASIC19.33■□□□□ 0.68
LIMS3P0CW19 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS3P0CW19 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMS3P0CW19 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.33■□□□□ 0.68
LIMS3P0CW19 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMS3P0CW19 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS3P0CW19 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS3P0CW19 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS3P0CW19 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS3P0CW19 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS3P0CW19 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LIMS3P0CW19 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMS3P0CW19 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.33■□□□□ 0.68
LIMS3P0CW19 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMS3P0CW19 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LIMS3P0CW19 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.32■□□□□ 0.68
LIMS3P0CW19 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.32■□□□□ 0.68
LIMS3P0CW19 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.32■□□□□ 0.68
LIMS3P0CW19 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.32■□□□□ 0.68
LIMS3P0CW19 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMS3P0CW19 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMS3P0CW19 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMS3P0CW19 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS3P0CW19 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMS3P0CW19 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS3P0CW19 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS3P0CW19 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS3P0CW19 MIR4508-201ENST00000584178 70 ntBASIC19.31■□□□□ 0.68
LIMS3P0CW19 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
LIMS3P0CW19 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS3P0CW19 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS3P0CW19 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LIMS3P0CW19 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMS3P0CW19 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMS3P0CW19 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
LIMS3P0CW19 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS3P0CW19 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS3P0CW19 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS3P0CW19 MIR6722-201ENST00000617286 78 ntBASIC19.3■□□□□ 0.68
LIMS3P0CW19 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS3P0CW19 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMS3P0CW19 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LIMS3P0CW19 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMS3P0CW19 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMS3P0CW19 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
LIMS3P0CW19 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS3P0CW19 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS3P0CW19 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMS3P0CW19 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LIMS3P0CW19 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS3P0CW19 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS3P0CW19 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS3P0CW19 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMS3P0CW19 ABHD17AP5-201ENST00000580133 923 ntBASIC19.29■□□□□ 0.68
LIMS3P0CW19 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS3P0CW19 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS3P0CW19 AL157384.1-201ENST00000445995 2473 ntBASIC19.29■□□□□ 0.68
LIMS3P0CW19 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMS3P0CW19 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMS3P0CW19 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
LIMS3P0CW19 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LIMS3P0CW19 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 AC137630.3-201ENST00000607245 391 ntBASIC19.28■□□□□ 0.68
LIMS3P0CW19 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMS3P0CW19 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms