Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV1-1A0A0B4J248 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
TRAV1-1A0A0B4J248 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
TRAV1-1A0A0B4J248 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAV1-1A0A0B4J248 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.02■□□□□ 0.32
TRAV1-1A0A0B4J248 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
TRAV1-1A0A0B4J248 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 CA15P2-201ENST00000611168 834 ntBASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
TRAV1-1A0A0B4J248 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
TRAV1-1A0A0B4J248 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 USF2-207ENST00000595068 1612 ntTSL 5 BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.99■□□□□ 0.31
TRAV1-1A0A0B4J248 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TRAV1-1A0A0B4J248 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms