Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USH1CQ9Y6N9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
USH1CQ9Y6N9 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
USH1CQ9Y6N9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC21.67■■□□□ 1.06
USH1CQ9Y6N9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
USH1CQ9Y6N9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
USH1CQ9Y6N9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
USH1CQ9Y6N9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 AC129492.7-201ENST00000622992 756 ntBASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
USH1CQ9Y6N9 AF131216.4-201ENST00000638924 1588 ntBASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 AC019171.1-201ENST00000601251 1056 ntBASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 AC092667.1-201ENST00000434301 2586 ntBASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USH1CQ9Y6N9 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
USH1CQ9Y6N9 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USH1CQ9Y6N9 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
USH1CQ9Y6N9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.64■■□□□ 1.06
USH1CQ9Y6N9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USH1CQ9Y6N9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.64■■□□□ 1.06
USH1CQ9Y6N9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 AC004448.1-201ENST00000458332 883 ntBASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 HYI-210ENST00000486909 905 ntTSL 5 BASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 AC244015.2-201ENST00000616358 1861 ntBASIC21.64■■□□□ 1.05
USH1CQ9Y6N9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USH1CQ9Y6N9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 AC120024.1-201ENST00000562672 995 ntBASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USH1CQ9Y6N9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
USH1CQ9Y6N9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
USH1CQ9Y6N9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.6■■□□□ 1.05
USH1CQ9Y6N9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
USH1CQ9Y6N9 U85056.1-201ENST00000616429 682 ntBASIC21.6■■□□□ 1.05
USH1CQ9Y6N9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
USH1CQ9Y6N9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.6■■□□□ 1.05
USH1CQ9Y6N9 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
USH1CQ9Y6N9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms