Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4AQ9UN37 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4AQ9UN37 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4AQ9UN37 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
VPS4AQ9UN37 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4AQ9UN37 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
VPS4AQ9UN37 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VPS4AQ9UN37 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 AC242852.2-201ENST00000615738 1807 ntBASIC21■□□□□ 0.95
VPS4AQ9UN37 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21■□□□□ 0.95
VPS4AQ9UN37 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21■□□□□ 0.95
VPS4AQ9UN37 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21■□□□□ 0.95
VPS4AQ9UN37 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 AC005703.6-201ENST00000623265 1329 ntBASIC21■□□□□ 0.95
VPS4AQ9UN37 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21■□□□□ 0.95
VPS4AQ9UN37 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21■□□□□ 0.95
VPS4AQ9UN37 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS4AQ9UN37 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 CA15P2-201ENST00000611168 834 ntBASIC20.99■□□□□ 0.95
VPS4AQ9UN37 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 AC127496.7-201ENST00000625110 1798 ntBASIC20.99■□□□□ 0.95
VPS4AQ9UN37 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS4AQ9UN37 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 RASA4CP-201ENST00000424092 1398 ntBASIC20.98■□□□□ 0.95
VPS4AQ9UN37 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS4AQ9UN37 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS4AQ9UN37 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 AC027682.1-201ENST00000562846 899 ntBASIC20.96■□□□□ 0.95
VPS4AQ9UN37 MIR4767-201ENST00000582827 78 ntBASIC20.96■□□□□ 0.95
VPS4AQ9UN37 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS4AQ9UN37 PKD1P6-201ENST00000343738 4769 ntBASIC20.96■□□□□ 0.95
VPS4AQ9UN37 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
VPS4AQ9UN37 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
VPS4AQ9UN37 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4AQ9UN37 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4AQ9UN37 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
VPS4AQ9UN37 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4AQ9UN37 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS4AQ9UN37 IRS3P-201ENST00000223076 1006 ntBASIC20.95■□□□□ 0.94
VPS4AQ9UN37 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS4AQ9UN37 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 AC090192.1-201ENST00000517740 490 ntBASIC20.94■□□□□ 0.94
VPS4AQ9UN37 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
VPS4AQ9UN37 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.93■□□□□ 0.94
VPS4AQ9UN37 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.93■□□□□ 0.94
VPS4AQ9UN37 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
VPS4AQ9UN37 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms