Protein–RNA interactions for Protein: Q9P219

CCDC88C, Protein Daple, humanhuman

Predictions only

Length 2,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88CQ9P219 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CCDC88CQ9P219 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 AL031602.1-201ENST00000633169 911 ntBASIC20.85■□□□□ 0.93
CCDC88CQ9P219 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CCDC88CQ9P219 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 AL162430.1-201ENST00000480705 870 ntBASIC20.84■□□□□ 0.93
CCDC88CQ9P219 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.84■□□□□ 0.93
CCDC88CQ9P219 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC88CQ9P219 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC88CQ9P219 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC88CQ9P219 IKBKGP1-201ENST00000612193 1073 ntBASIC20.83■□□□□ 0.93
CCDC88CQ9P219 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC88CQ9P219 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC88CQ9P219 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC88CQ9P219 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
CCDC88CQ9P219 IGHV3-19-201ENST00000521488 291 ntBASIC20.83■□□□□ 0.92
CCDC88CQ9P219 AC004687.1-201ENST00000579003 1625 ntBASIC20.83■□□□□ 0.92
CCDC88CQ9P219 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 LINC00565-201ENST00000562710 2331 ntBASIC20.82■□□□□ 0.92
CCDC88CQ9P219 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC88CQ9P219 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 DUX4L2-201ENST00000561772 1275 ntBASIC20.81■□□□□ 0.92
CCDC88CQ9P219 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 DUX4L6-201ENST00000626483 1275 ntBASIC20.81■□□□□ 0.92
CCDC88CQ9P219 DUX4L1-201ENST00000627662 1275 ntBASIC20.81■□□□□ 0.92
CCDC88CQ9P219 DUX4L8-201ENST00000629013 1275 ntBASIC20.81■□□□□ 0.92
CCDC88CQ9P219 DUX4L3-201ENST00000630187 1275 ntBASIC20.81■□□□□ 0.92
CCDC88CQ9P219 DUX4L7-201ENST00000630678 1275 ntBASIC20.81■□□□□ 0.92
CCDC88CQ9P219 DUX4L5-201ENST00000630834 1275 ntBASIC20.81■□□□□ 0.92
CCDC88CQ9P219 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC88CQ9P219 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.8■□□□□ 0.92
CCDC88CQ9P219 KRT18P14-201ENST00000534205 1250 ntBASIC20.8■□□□□ 0.92
CCDC88CQ9P219 DUX4L4-201ENST00000566884 1269 ntBASIC20.8■□□□□ 0.92
CCDC88CQ9P219 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC88CQ9P219 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88CQ9P219 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC88CQ9P219 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC88CQ9P219 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC88CQ9P219 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms