Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.25■□□□□ 0.83
USE1Q9NZ43 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USE1Q9NZ43 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USE1Q9NZ43 AC004448.1-201ENST00000458332 883 ntBASIC20.25■□□□□ 0.83
USE1Q9NZ43 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USE1Q9NZ43 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
USE1Q9NZ43 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
USE1Q9NZ43 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.25■□□□□ 0.83
USE1Q9NZ43 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
USE1Q9NZ43 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USE1Q9NZ43 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USE1Q9NZ43 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USE1Q9NZ43 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
USE1Q9NZ43 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USE1Q9NZ43 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USE1Q9NZ43 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USE1Q9NZ43 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USE1Q9NZ43 RNF126P1-201ENST00000567452 1320 ntBASIC20.24■□□□□ 0.83
USE1Q9NZ43 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USE1Q9NZ43 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.23■□□□□ 0.83
USE1Q9NZ43 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
USE1Q9NZ43 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USE1Q9NZ43 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USE1Q9NZ43 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
USE1Q9NZ43 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
USE1Q9NZ43 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USE1Q9NZ43 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USE1Q9NZ43 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.22■□□□□ 0.83
USE1Q9NZ43 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
USE1Q9NZ43 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.22■□□□□ 0.83
USE1Q9NZ43 DUX4L9-201ENST00000449051 1259 ntBASIC20.22■□□□□ 0.83
USE1Q9NZ43 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
USE1Q9NZ43 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.22■□□□□ 0.83
USE1Q9NZ43 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.22■□□□□ 0.83
USE1Q9NZ43 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
USE1Q9NZ43 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
USE1Q9NZ43 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
USE1Q9NZ43 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
USE1Q9NZ43 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.21■□□□□ 0.83
USE1Q9NZ43 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USE1Q9NZ43 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USE1Q9NZ43 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.21■□□□□ 0.83
USE1Q9NZ43 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
USE1Q9NZ43 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USE1Q9NZ43 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
USE1Q9NZ43 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USE1Q9NZ43 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USE1Q9NZ43 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USE1Q9NZ43 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USE1Q9NZ43 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
USE1Q9NZ43 AF131216.4-201ENST00000638924 1588 ntBASIC20.21■□□□□ 0.83
USE1Q9NZ43 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USE1Q9NZ43 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
USE1Q9NZ43 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USE1Q9NZ43 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USE1Q9NZ43 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.2■□□□□ 0.82
USE1Q9NZ43 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USE1Q9NZ43 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.2■□□□□ 0.82
USE1Q9NZ43 AC022616.5-201ENST00000518796 181 ntBASIC20.2■□□□□ 0.82
USE1Q9NZ43 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.2■□□□□ 0.82
USE1Q9NZ43 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.2■□□□□ 0.82
USE1Q9NZ43 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USE1Q9NZ43 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USE1Q9NZ43 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USE1Q9NZ43 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
USE1Q9NZ43 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
USE1Q9NZ43 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.19■□□□□ 0.82
USE1Q9NZ43 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC20.19■□□□□ 0.82
USE1Q9NZ43 LINC01960-201ENST00000563759 1884 ntBASIC20.19■□□□□ 0.82
USE1Q9NZ43 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USE1Q9NZ43 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
USE1Q9NZ43 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
USE1Q9NZ43 AL121603.2-201ENST00000557373 2117 ntBASIC20.18■□□□□ 0.82
USE1Q9NZ43 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.18■□□□□ 0.82
USE1Q9NZ43 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USE1Q9NZ43 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USE1Q9NZ43 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USE1Q9NZ43 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.18■□□□□ 0.82
USE1Q9NZ43 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USE1Q9NZ43 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USE1Q9NZ43 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 155.2 ms