Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.1■□□□□ 0.97
CUEDC1Q9NWM3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.1■□□□□ 0.97
CUEDC1Q9NWM3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CUEDC1Q9NWM3 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CUEDC1Q9NWM3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CUEDC1Q9NWM3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 AC233992.3-201ENST00000607491 485 ntBASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CUEDC1Q9NWM3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 MIR939-201ENST00000401314 82 ntBASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 AC099791.1-201ENST00000416440 715 ntBASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CUEDC1Q9NWM3 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
CUEDC1Q9NWM3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
CUEDC1Q9NWM3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.08■□□□□ 0.96
CUEDC1Q9NWM3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CUEDC1Q9NWM3 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.07■□□□□ 0.96
CUEDC1Q9NWM3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 AC012676.1-201ENST00000574705 1949 ntBASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 AC097381.1-201ENST00000429019 1296 ntBASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 AC105265.2-201ENST00000467189 838 ntBASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 AC027682.1-201ENST00000562846 899 ntBASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 AC233723.2-201ENST00000623798 2106 ntBASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 AL136967.2-201ENST00000623968 743 ntBASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CUEDC1Q9NWM3 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CUEDC1Q9NWM3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 AC126544.1-201ENST00000580842 1059 ntBASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 ESRRAP2-201ENST00000418437 1549 ntBASIC21.04■□□□□ 0.96
CUEDC1Q9NWM3 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CUEDC1Q9NWM3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms