Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.68■□□□□ 0.58
CHMP1AQ9HD42 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 AC144652.1-201ENST00000609974 1624 ntBASIC18.67■□□□□ 0.58
CHMP1AQ9HD42 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CHMP1AQ9HD42 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 AC103724.3-201ENST00000564481 992 ntBASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.65■□□□□ 0.58
CHMP1AQ9HD42 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CHMP1AQ9HD42 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 AC103834.1-201ENST00000520383 144 ntBASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 AL031848.2-201ENST00000607670 837 ntBASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.64■□□□□ 0.57
CHMP1AQ9HD42 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CHMP1AQ9HD42 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 AC005703.6-201ENST00000623265 1329 ntBASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
CHMP1AQ9HD42 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms