Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.77■□□□□ 0.92
VMP1Q96GC9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
VMP1Q96GC9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.77■□□□□ 0.92
VMP1Q96GC9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.77■□□□□ 0.92
VMP1Q96GC9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.77■□□□□ 0.92
VMP1Q96GC9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.77■□□□□ 0.92
VMP1Q96GC9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.77■□□□□ 0.91
VMP1Q96GC9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
VMP1Q96GC9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.77■□□□□ 0.91
VMP1Q96GC9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
VMP1Q96GC9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.76■□□□□ 0.91
VMP1Q96GC9 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VMP1Q96GC9 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.76■□□□□ 0.91
VMP1Q96GC9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
VMP1Q96GC9 EDA-201ENST00000338901 1233 ntBASIC20.76■□□□□ 0.91
VMP1Q96GC9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.76■□□□□ 0.91
VMP1Q96GC9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.76■□□□□ 0.91
VMP1Q96GC9 AC005837.3-201ENST00000612163 286 ntBASIC20.76■□□□□ 0.91
VMP1Q96GC9 AC136469.2-201ENST00000623944 1028 ntBASIC20.76■□□□□ 0.91
VMP1Q96GC9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.76■□□□□ 0.91
VMP1Q96GC9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
VMP1Q96GC9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
VMP1Q96GC9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
VMP1Q96GC9 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
VMP1Q96GC9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VMP1Q96GC9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VMP1Q96GC9 AC019069.1-201ENST00000610008 1333 ntBASIC20.76■□□□□ 0.91
VMP1Q96GC9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VMP1Q96GC9 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
VMP1Q96GC9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.75■□□□□ 0.91
VMP1Q96GC9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VMP1Q96GC9 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
VMP1Q96GC9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VMP1Q96GC9 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VMP1Q96GC9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
VMP1Q96GC9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.75■□□□□ 0.91
VMP1Q96GC9 MIR4767-201ENST00000582827 78 ntBASIC20.75■□□□□ 0.91
VMP1Q96GC9 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
VMP1Q96GC9 AC079630.1-202ENST00000618127 1840 ntBASIC20.75■□□□□ 0.91
VMP1Q96GC9 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
VMP1Q96GC9 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.75■□□□□ 0.91
VMP1Q96GC9 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
VMP1Q96GC9 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
VMP1Q96GC9 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
VMP1Q96GC9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VMP1Q96GC9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
VMP1Q96GC9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
VMP1Q96GC9 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VMP1Q96GC9 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VMP1Q96GC9 ECEL1P1-201ENST00000373592 1742 ntBASIC20.74■□□□□ 0.91
VMP1Q96GC9 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.74■□□□□ 0.91
VMP1Q96GC9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
VMP1Q96GC9 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.74■□□□□ 0.91
VMP1Q96GC9 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VMP1Q96GC9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
VMP1Q96GC9 DUSP8P3-201ENST00000399571 1760 ntBASIC20.74■□□□□ 0.91
VMP1Q96GC9 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VMP1Q96GC9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.73■□□□□ 0.91
VMP1Q96GC9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VMP1Q96GC9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VMP1Q96GC9 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
VMP1Q96GC9 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.73■□□□□ 0.91
VMP1Q96GC9 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.73■□□□□ 0.91
VMP1Q96GC9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.73■□□□□ 0.91
VMP1Q96GC9 AL355001.2-201ENST00000620617 1191 ntBASIC20.73■□□□□ 0.91
VMP1Q96GC9 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.73■□□□□ 0.91
VMP1Q96GC9 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
VMP1Q96GC9 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
VMP1Q96GC9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
VMP1Q96GC9 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
VMP1Q96GC9 GUSBP5-202ENST00000510805 1989 ntBASIC20.72■□□□□ 0.91
VMP1Q96GC9 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.72■□□□□ 0.91
VMP1Q96GC9 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
VMP1Q96GC9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.72■□□□□ 0.91
VMP1Q96GC9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 AL499627.2-201ENST00000606283 725 ntBASIC20.72■□□□□ 0.91
VMP1Q96GC9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
VMP1Q96GC9 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.72■□□□□ 0.91
VMP1Q96GC9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.72■□□□□ 0.91
VMP1Q96GC9 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
VMP1Q96GC9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
VMP1Q96GC9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VMP1Q96GC9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
VMP1Q96GC9 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
VMP1Q96GC9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VMP1Q96GC9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
VMP1Q96GC9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.71■□□□□ 0.91
VMP1Q96GC9 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms