Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLRN3Q8NCR9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 AC005559.1-201ENST00000589661 871 ntBASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLRN3Q8NCR9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 RPS2-209ENST00000529806 993 ntTSL 3 BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 MIR3665-201ENST00000578708 105 ntBASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLRN3Q8NCR9 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLRN3Q8NCR9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLRN3Q8NCR9 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLRN3Q8NCR9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 RPS2-210ENST00000530225 765 ntTSL 2 BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 AC018445.3-201ENST00000624177 1945 ntBASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
CLRN3Q8NCR9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC17.38■□□□□ 0.37
CLRN3Q8NCR9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 AC108673.1-201ENST00000510422 1159 ntBASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CLRN3Q8NCR9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLRN3Q8NCR9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms