Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC23.33■■□□□ 1.32
DDX53Q86TM3 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX53Q86TM3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX53Q86TM3 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX53Q86TM3 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX53Q86TM3 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
DDX53Q86TM3 AC026185.1-201ENST00000445748 174 ntBASIC23.32■■□□□ 1.32
DDX53Q86TM3 TESC-206ENST00000541210 936 ntTSL 3 BASIC23.32■■□□□ 1.32
DDX53Q86TM3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
DDX53Q86TM3 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.32■■□□□ 1.32
DDX53Q86TM3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX53Q86TM3 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
DDX53Q86TM3 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
DDX53Q86TM3 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.31■■□□□ 1.32
DDX53Q86TM3 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC23.31■■□□□ 1.32
DDX53Q86TM3 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC23.31■■□□□ 1.32
DDX53Q86TM3 GXYLT1P5-201ENST00000614548 1189 ntBASIC23.31■■□□□ 1.32
DDX53Q86TM3 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
DDX53Q86TM3 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
DDX53Q86TM3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
DDX53Q86TM3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX53Q86TM3 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
DDX53Q86TM3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
DDX53Q86TM3 AC079140.4-201ENST00000507448 529 ntBASIC23.3■■□□□ 1.32
DDX53Q86TM3 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC23.3■■□□□ 1.32
DDX53Q86TM3 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.3■■□□□ 1.32
DDX53Q86TM3 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC23.3■■□□□ 1.32
DDX53Q86TM3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
DDX53Q86TM3 ABCB10P4-201ENST00000566803 2184 ntBASIC23.3■■□□□ 1.32
DDX53Q86TM3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX53Q86TM3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
DDX53Q86TM3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX53Q86TM3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
DDX53Q86TM3 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC23.29■■□□□ 1.32
DDX53Q86TM3 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
DDX53Q86TM3 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC23.29■■□□□ 1.32
DDX53Q86TM3 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
DDX53Q86TM3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
DDX53Q86TM3 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX53Q86TM3 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX53Q86TM3 ASL-203ENST00000380839 1765 ntTSL 5 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 KRT18P11-201ENST00000435214 1283 ntBASIC23.28■■□□□ 1.32
DDX53Q86TM3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX53Q86TM3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
DDX53Q86TM3 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.28■■□□□ 1.32
DDX53Q86TM3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX53Q86TM3 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC23.27■■□□□ 1.32
DDX53Q86TM3 METTL26-203ENST00000397664 604 ntTSL 2 BASIC23.27■■□□□ 1.32
DDX53Q86TM3 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
DDX53Q86TM3 PPP1R14BP3-201ENST00000509033 445 ntBASIC23.27■■□□□ 1.32
DDX53Q86TM3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX53Q86TM3 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
DDX53Q86TM3 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX53Q86TM3 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX53Q86TM3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX53Q86TM3 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
DDX53Q86TM3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
DDX53Q86TM3 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC23.26■■□□□ 1.31
DDX53Q86TM3 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
DDX53Q86TM3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
DDX53Q86TM3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX53Q86TM3 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX53Q86TM3 DUSP8P3-201ENST00000399571 1760 ntBASIC23.25■■□□□ 1.31
DDX53Q86TM3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX53Q86TM3 ESRRAP2-201ENST00000418437 1549 ntBASIC23.25■■□□□ 1.31
DDX53Q86TM3 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX53Q86TM3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.25■■□□□ 1.31
DDX53Q86TM3 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC23.25■■□□□ 1.31
DDX53Q86TM3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
DDX53Q86TM3 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
DDX53Q86TM3 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
DDX53Q86TM3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
DDX53Q86TM3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
DDX53Q86TM3 MAP2K4P1-201ENST00000438453 1195 ntBASIC23.24■■□□□ 1.31
DDX53Q86TM3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC23.24■■□□□ 1.31
DDX53Q86TM3 SPI1-203ENST00000533030 661 ntTSL 2 BASIC23.24■■□□□ 1.31
DDX53Q86TM3 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC23.24■■□□□ 1.31
DDX53Q86TM3 AC011767.1-201ENST00000617410 1153 ntBASIC23.24■■□□□ 1.31
DDX53Q86TM3 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
DDX53Q86TM3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
DDX53Q86TM3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.24■■□□□ 1.31
DDX53Q86TM3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
DDX53Q86TM3 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
DDX53Q86TM3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC23.23■■□□□ 1.31
DDX53Q86TM3 CROCCP5-201ENST00000436658 830 ntBASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms