Protein–RNA interactions for Protein: Q6ZR62

RTL4, Retrotransposon Gag-like protein 4, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL4Q6ZR62 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 MIR935-201ENST00000401179 91 ntBASIC20.38■□□□□ 0.85
RTL4Q6ZR62 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RTL4Q6ZR62 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 SLC47A1P1-202ENST00000449666 945 ntBASIC20.37■□□□□ 0.85
RTL4Q6ZR62 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RTL4Q6ZR62 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 AC126544.1-201ENST00000580842 1059 ntBASIC20.36■□□□□ 0.85
RTL4Q6ZR62 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RTL4Q6ZR62 C1orf229-201ENST00000623686 2258 ntBASIC20.36■□□□□ 0.85
RTL4Q6ZR62 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.35■□□□□ 0.85
RTL4Q6ZR62 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 OR2I1P-207ENST00000453522 948 ntBASIC20.35■□□□□ 0.85
RTL4Q6ZR62 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RTL4Q6ZR62 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 AL353803.4-201ENST00000565882 1934 ntBASIC20.34■□□□□ 0.85
RTL4Q6ZR62 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.34■□□□□ 0.85
RTL4Q6ZR62 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.33■□□□□ 0.85
RTL4Q6ZR62 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.33■□□□□ 0.85
RTL4Q6ZR62 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.33■□□□□ 0.85
RTL4Q6ZR62 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.33■□□□□ 0.84
RTL4Q6ZR62 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RTL4Q6ZR62 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTL4Q6ZR62 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
RTL4Q6ZR62 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RTL4Q6ZR62 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RTL4Q6ZR62 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.32■□□□□ 0.84
RTL4Q6ZR62 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms