Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TRIM40Q6P9F5 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM40Q6P9F5 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TRIM40Q6P9F5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM40Q6P9F5 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TRIM40Q6P9F5 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.92■□□□□ 0.94
TRIM40Q6P9F5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRIM40Q6P9F5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 AC024257.2-201ENST00000549699 147 ntBASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
TRIM40Q6P9F5 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 AC242852.2-201ENST00000615738 1807 ntBASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 AC127496.7-201ENST00000625110 1798 ntBASIC20.9■□□□□ 0.94
TRIM40Q6P9F5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM40Q6P9F5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
TRIM40Q6P9F5 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM40Q6P9F5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.89■□□□□ 0.94
TRIM40Q6P9F5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM40Q6P9F5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.89■□□□□ 0.94
TRIM40Q6P9F5 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 MIR4767-201ENST00000582827 78 ntBASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM40Q6P9F5 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 PBX2P1-201ENST00000493219 1291 ntBASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM40Q6P9F5 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 AC106739.1-201ENST00000617035 715 ntBASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 AC110285.6-201ENST00000617652 491 ntBASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM40Q6P9F5 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
TRIM40Q6P9F5 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM40Q6P9F5 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM40Q6P9F5 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRIM40Q6P9F5 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.86■□□□□ 0.93
TRIM40Q6P9F5 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TRIM40Q6P9F5 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM40Q6P9F5 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRIM40Q6P9F5 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM40Q6P9F5 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms