Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF220Q5VTB9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.92■□□□□ 0.94
RNF220Q5VTB9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.92■□□□□ 0.94
RNF220Q5VTB9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.92■□□□□ 0.94
RNF220Q5VTB9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF220Q5VTB9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
RNF220Q5VTB9 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 KRT8P33-201ENST00000508125 1423 ntBASIC20.91■□□□□ 0.94
RNF220Q5VTB9 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 AC092053.2-201ENST00000640557 1818 ntBASIC20.91■□□□□ 0.94
RNF220Q5VTB9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
RNF220Q5VTB9 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF220Q5VTB9 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF220Q5VTB9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 AC139530.1-201ENST00000575312 1977 ntBASIC20.88■□□□□ 0.93
RNF220Q5VTB9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 ESRRAP2-201ENST00000418437 1549 ntBASIC20.88■□□□□ 0.93
RNF220Q5VTB9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
RNF220Q5VTB9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.87■□□□□ 0.93
RNF220Q5VTB9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.87■□□□□ 0.93
RNF220Q5VTB9 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF220Q5VTB9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF220Q5VTB9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.87■□□□□ 0.93
RNF220Q5VTB9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF220Q5VTB9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF220Q5VTB9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 AC137630.3-201ENST00000607245 391 ntBASIC20.86■□□□□ 0.93
RNF220Q5VTB9 AL031848.2-201ENST00000607670 837 ntBASIC20.86■□□□□ 0.93
RNF220Q5VTB9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF220Q5VTB9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF220Q5VTB9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.84■□□□□ 0.93
RNF220Q5VTB9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF220Q5VTB9 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms