Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC25.33■■□□□ 1.65
CCDC144BQ3MJ40 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC25.33■■□□□ 1.64
CCDC144BQ3MJ40 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC25.33■■□□□ 1.64
CCDC144BQ3MJ40 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.64
CCDC144BQ3MJ40 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.33■■□□□ 1.64
CCDC144BQ3MJ40 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 MIR6084-201ENST00000622012 110 ntBASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 RARRES2P11-201ENST00000635158 484 ntBASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CCDC144BQ3MJ40 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 AC123595.1-201ENST00000440769 1046 ntBASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 AL499627.2-201ENST00000606283 725 ntBASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 DUSP8P3-201ENST00000399571 1760 ntBASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CCDC144BQ3MJ40 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 AC090192.1-201ENST00000517740 490 ntBASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
CCDC144BQ3MJ40 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 AC012414.1-201ENST00000556676 535 ntBASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC25.29■■□□□ 1.64
CCDC144BQ3MJ40 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 AC010525.1-201ENST00000585559 441 ntBASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC144BQ3MJ40 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 AL137784.2-201ENST00000607332 1000 ntBASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 AL354811.1-201ENST00000610286 706 ntBASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC144BQ3MJ40 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
CCDC144BQ3MJ40 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC25.26■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms