Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.47■■□□□ 1.19
NEK3P51956 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
NEK3P51956 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
NEK3P51956 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
NEK3P51956 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
NEK3P51956 ZNRF2P3-201ENST00000424200 374 ntBASIC22.47■■□□□ 1.19
NEK3P51956 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
NEK3P51956 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.47■■□□□ 1.19
NEK3P51956 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
NEK3P51956 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.47■■□□□ 1.19
NEK3P51956 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
NEK3P51956 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
NEK3P51956 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
NEK3P51956 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.47■■□□□ 1.19
NEK3P51956 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
NEK3P51956 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.46■■□□□ 1.19
NEK3P51956 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
NEK3P51956 AC105265.2-201ENST00000467189 838 ntBASIC22.46■■□□□ 1.19
NEK3P51956 DUX4L4-201ENST00000566884 1269 ntBASIC22.46■■□□□ 1.19
NEK3P51956 AC008764.7-201ENST00000593779 1081 ntBASIC22.46■■□□□ 1.19
NEK3P51956 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.46■■□□□ 1.19
NEK3P51956 RASA4CP-201ENST00000424092 1398 ntBASIC22.46■■□□□ 1.19
NEK3P51956 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.46■■□□□ 1.19
NEK3P51956 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC22.46■■□□□ 1.19
NEK3P51956 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
NEK3P51956 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
NEK3P51956 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC22.46■■□□□ 1.19
NEK3P51956 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
NEK3P51956 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
NEK3P51956 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.19
NEK3P51956 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
NEK3P51956 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
NEK3P51956 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
NEK3P51956 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
NEK3P51956 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
NEK3P51956 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
NEK3P51956 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.45■■□□□ 1.18
NEK3P51956 CA15P2-201ENST00000611168 834 ntBASIC22.45■■□□□ 1.18
NEK3P51956 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
NEK3P51956 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
NEK3P51956 ESRRAP2-201ENST00000418437 1549 ntBASIC22.45■■□□□ 1.18
NEK3P51956 AC242852.2-201ENST00000615738 1807 ntBASIC22.45■■□□□ 1.18
NEK3P51956 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.45■■□□□ 1.18
NEK3P51956 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC22.45■■□□□ 1.18
NEK3P51956 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
NEK3P51956 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
NEK3P51956 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
NEK3P51956 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
NEK3P51956 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.44■■□□□ 1.18
NEK3P51956 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
NEK3P51956 AC099791.1-201ENST00000416440 715 ntBASIC22.44■■□□□ 1.18
NEK3P51956 BX842568.3-201ENST00000418104 571 ntBASIC22.44■■□□□ 1.18
NEK3P51956 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.44■■□□□ 1.18
NEK3P51956 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
NEK3P51956 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
NEK3P51956 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.44■■□□□ 1.18
NEK3P51956 LINC01529-204ENST00000636474 1715 ntBASIC22.44■■□□□ 1.18
NEK3P51956 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
NEK3P51956 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
NEK3P51956 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC22.43■■□□□ 1.18
NEK3P51956 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC22.43■■□□□ 1.18
NEK3P51956 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.43■■□□□ 1.18
NEK3P51956 AL499627.2-201ENST00000606283 725 ntBASIC22.43■■□□□ 1.18
NEK3P51956 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.43■■□□□ 1.18
NEK3P51956 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC22.43■■□□□ 1.18
NEK3P51956 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
NEK3P51956 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.43■■□□□ 1.18
NEK3P51956 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
NEK3P51956 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
NEK3P51956 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.42■■□□□ 1.18
NEK3P51956 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.42■■□□□ 1.18
NEK3P51956 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
NEK3P51956 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
NEK3P51956 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
NEK3P51956 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
NEK3P51956 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.42■■□□□ 1.18
NEK3P51956 AC233992.3-201ENST00000607491 485 ntBASIC22.42■■□□□ 1.18
NEK3P51956 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.42■■□□□ 1.18
NEK3P51956 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NEK3P51956 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
NEK3P51956 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
NEK3P51956 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
NEK3P51956 AC133637.1-201ENST00000624115 1537 ntBASIC22.41■■□□□ 1.18
NEK3P51956 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NEK3P51956 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.41■■□□□ 1.18
NEK3P51956 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NEK3P51956 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.41■■□□□ 1.18
NEK3P51956 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NEK3P51956 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NEK3P51956 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NEK3P51956 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
NEK3P51956 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
NEK3P51956 AL024507.2-201ENST00000606070 2574 ntBASIC22.41■■□□□ 1.18
NEK3P51956 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NEK3P51956 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
NEK3P51956 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.4■■□□□ 1.18
NEK3P51956 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.4■■□□□ 1.18
NEK3P51956 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
NEK3P51956 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.4■■□□□ 1.18
NEK3P51956 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms