Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
RFX3P48380 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
RFX3P48380 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
RFX3P48380 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.4■□□□□ 0.86
RFX3P48380 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.4■□□□□ 0.86
RFX3P48380 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 AL499627.2-201ENST00000606283 725 ntBASIC20.4■□□□□ 0.86
RFX3P48380 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RFX3P48380 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RFX3P48380 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
RFX3P48380 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
RFX3P48380 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RFX3P48380 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.39■□□□□ 0.86
RFX3P48380 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.86
RFX3P48380 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX3P48380 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.39■□□□□ 0.85
RFX3P48380 SERBP1P1-201ENST00000396021 1160 ntBASIC20.39■□□□□ 0.85
RFX3P48380 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX3P48380 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.39■□□□□ 0.85
RFX3P48380 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX3P48380 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.39■□□□□ 0.85
RFX3P48380 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX3P48380 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RFX3P48380 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RFX3P48380 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RFX3P48380 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RFX3P48380 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.38■□□□□ 0.85
RFX3P48380 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RFX3P48380 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX3P48380 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX3P48380 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
RFX3P48380 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX3P48380 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX3P48380 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX3P48380 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.38■□□□□ 0.85
RFX3P48380 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RFX3P48380 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RFX3P48380 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX3P48380 LINC01960-201ENST00000563759 1884 ntBASIC20.37■□□□□ 0.85
RFX3P48380 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
RFX3P48380 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX3P48380 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
RFX3P48380 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.37■□□□□ 0.85
RFX3P48380 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.37■□□□□ 0.85
RFX3P48380 DUX4L19-201ENST00000557448 1267 ntBASIC20.37■□□□□ 0.85
RFX3P48380 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.37■□□□□ 0.85
RFX3P48380 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX3P48380 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.37■□□□□ 0.85
RFX3P48380 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
RFX3P48380 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX3P48380 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.37■□□□□ 0.85
RFX3P48380 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX3P48380 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
RFX3P48380 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
RFX3P48380 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
RFX3P48380 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC20.36■□□□□ 0.85
RFX3P48380 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.36■□□□□ 0.85
RFX3P48380 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
RFX3P48380 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.36■□□□□ 0.85
RFX3P48380 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.36■□□□□ 0.85
RFX3P48380 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RFX3P48380 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.36■□□□□ 0.85
RFX3P48380 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RFX3P48380 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
RFX3P48380 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RFX3P48380 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RFX3P48380 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RFX3P48380 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RFX3P48380 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
RFX3P48380 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RFX3P48380 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms