Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
CDX1P47902 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CDX1P47902 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.64■□□□□ 0.41
CDX1P47902 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDX1P47902 NALT1-201ENST00000429224 738 ntTSL 5 BASIC17.64■□□□□ 0.41
CDX1P47902 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.64■□□□□ 0.41
CDX1P47902 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.64■□□□□ 0.41
CDX1P47902 RALB-208ENST00000631312 311 ntTSL 5 BASIC17.64■□□□□ 0.41
CDX1P47902 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX1P47902 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX1P47902 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX1P47902 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDX1P47902 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CDX1P47902 ALDH1A3-203ENST00000557963 1670 ntBASIC17.64■□□□□ 0.41
CDX1P47902 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.64■□□□□ 0.41
CDX1P47902 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.64■□□□□ 0.41
CDX1P47902 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDX1P47902 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.64■□□□□ 0.41
CDX1P47902 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC17.63■□□□□ 0.41
CDX1P47902 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX1P47902 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX1P47902 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX1P47902 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX1P47902 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC17.63■□□□□ 0.41
CDX1P47902 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX1P47902 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC17.63■□□□□ 0.41
CDX1P47902 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.63■□□□□ 0.41
CDX1P47902 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX1P47902 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDX1P47902 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.63■□□□□ 0.41
CDX1P47902 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.63■□□□□ 0.41
CDX1P47902 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDX1P47902 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CDX1P47902 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.62■□□□□ 0.41
CDX1P47902 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.62■□□□□ 0.41
CDX1P47902 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.62■□□□□ 0.41
CDX1P47902 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC17.62■□□□□ 0.41
CDX1P47902 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.62■□□□□ 0.41
CDX1P47902 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.62■□□□□ 0.41
CDX1P47902 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CDX1P47902 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDX1P47902 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.61■□□□□ 0.41
CDX1P47902 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.61■□□□□ 0.41
CDX1P47902 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CDX1P47902 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.61■□□□□ 0.41
CDX1P47902 AC092171.4-201ENST00000609130 632 ntBASIC17.61■□□□□ 0.41
CDX1P47902 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CDX1P47902 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC17.61■□□□□ 0.41
CDX1P47902 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CDX1P47902 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
CDX1P47902 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDX1P47902 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CDX1P47902 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CDX1P47902 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
CDX1P47902 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.6■□□□□ 0.41
CDX1P47902 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CDX1P47902 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 AC096631.2-201ENST00000436136 790 ntBASIC17.6■□□□□ 0.41
CDX1P47902 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.6■□□□□ 0.41
CDX1P47902 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 DUX4L19-201ENST00000557448 1267 ntBASIC17.6■□□□□ 0.41
CDX1P47902 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC17.6■□□□□ 0.41
CDX1P47902 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.6■□□□□ 0.41
CDX1P47902 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDX1P47902 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CDX1P47902 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.6■□□□□ 0.41
CDX1P47902 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX1P47902 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC17.59■□□□□ 0.41
CDX1P47902 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX1P47902 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX1P47902 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDX1P47902 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDX1P47902 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms