Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DQA1P01909 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DQA1P01909 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC16.4■□□□□ 0.22
HLA-DQA1P01909 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC16.39■□□□□ 0.22
HLA-DQA1P01909 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
HLA-DQA1P01909 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
HLA-DQA1P01909 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 MIR4449-201ENST00000578365 66 ntBASIC16.39■□□□□ 0.21
HLA-DQA1P01909 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DQA1P01909 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 EI24-204ENST00000527235 1625 ntTSL 5 BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 AL022069.1-201ENST00000568025 1636 ntBASIC16.38■□□□□ 0.21
HLA-DQA1P01909 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HLA-DQA1P01909 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 ALDH1A3-203ENST00000557963 1670 ntBASIC16.37■□□□□ 0.21
HLA-DQA1P01909 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 AC087742.1-201ENST00000575880 1738 ntBASIC16.37■□□□□ 0.21
HLA-DQA1P01909 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HLA-DQA1P01909 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 AC022413.1-201ENST00000624602 984 ntBASIC16.36■□□□□ 0.21
HLA-DQA1P01909 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HLA-DQA1P01909 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC16.35■□□□□ 0.21
HLA-DQA1P01909 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 AC060814.1-201ENST00000554326 538 ntBASIC16.34■□□□□ 0.21
HLA-DQA1P01909 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HLA-DQA1P01909 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms