Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.97■□□□□ 0.95
LDLRP01130 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.97■□□□□ 0.95
LDLRP01130 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LDLRP01130 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.97■□□□□ 0.95
LDLRP01130 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LDLRP01130 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LDLRP01130 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.97■□□□□ 0.95
LDLRP01130 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
LDLRP01130 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LDLRP01130 AC092053.2-201ENST00000640557 1818 ntBASIC20.97■□□□□ 0.95
LDLRP01130 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LDLRP01130 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
LDLRP01130 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LDLRP01130 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.96■□□□□ 0.95
LDLRP01130 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.96■□□□□ 0.95
LDLRP01130 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LDLRP01130 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LDLRP01130 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LDLRP01130 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
LDLRP01130 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.96■□□□□ 0.95
LDLRP01130 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LDLRP01130 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LDLRP01130 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.96■□□□□ 0.95
LDLRP01130 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.96■□□□□ 0.95
LDLRP01130 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
LDLRP01130 ALDH1A3-203ENST00000557963 1670 ntBASIC20.96■□□□□ 0.95
LDLRP01130 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
LDLRP01130 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
LDLRP01130 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDLRP01130 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDLRP01130 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDLRP01130 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.95■□□□□ 0.94
LDLRP01130 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
LDLRP01130 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.95■□□□□ 0.94
LDLRP01130 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDLRP01130 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDLRP01130 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LDLRP01130 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
LDLRP01130 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LDLRP01130 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
LDLRP01130 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.94■□□□□ 0.94
LDLRP01130 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.94■□□□□ 0.94
LDLRP01130 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.94■□□□□ 0.94
LDLRP01130 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.94■□□□□ 0.94
LDLRP01130 AC024257.2-201ENST00000549699 147 ntBASIC20.94■□□□□ 0.94
LDLRP01130 MIR6821-201ENST00000617625 74 ntBASIC20.94■□□□□ 0.94
LDLRP01130 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
LDLRP01130 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.94■□□□□ 0.94
LDLRP01130 AC139530.1-201ENST00000575312 1977 ntBASIC20.94■□□□□ 0.94
LDLRP01130 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LDLRP01130 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LDLRP01130 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LDLRP01130 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDLRP01130 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LDLRP01130 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.93■□□□□ 0.94
LDLRP01130 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDLRP01130 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LDLRP01130 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDLRP01130 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LDLRP01130 AF131216.4-201ENST00000638924 1588 ntBASIC20.93■□□□□ 0.94
LDLRP01130 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LDLRP01130 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
LDLRP01130 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.92■□□□□ 0.94
LDLRP01130 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
LDLRP01130 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.92■□□□□ 0.94
LDLRP01130 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.92■□□□□ 0.94
LDLRP01130 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LDLRP01130 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LDLRP01130 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
LDLRP01130 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.91■□□□□ 0.94
LDLRP01130 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
LDLRP01130 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC20.91■□□□□ 0.94
LDLRP01130 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LDLRP01130 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDLRP01130 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
LDLRP01130 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
LDLRP01130 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms