Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.53■■□□□ 1.04
SNX3O60493 AC007952.6-201ENST00000573168 2673 ntBASIC21.52■■□□□ 1.04
SNX3O60493 AC003957.1-201ENST00000625108 2673 ntBASIC21.52■■□□□ 1.04
SNX3O60493 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SNX3O60493 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.52■■□□□ 1.04
SNX3O60493 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.52■■□□□ 1.04
SNX3O60493 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SNX3O60493 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SNX3O60493 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.52■■□□□ 1.04
SNX3O60493 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SNX3O60493 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SNX3O60493 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC21.52■■□□□ 1.04
SNX3O60493 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SNX3O60493 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
SNX3O60493 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SNX3O60493 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SNX3O60493 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SNX3O60493 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.51■■□□□ 1.03
SNX3O60493 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SNX3O60493 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.5■■□□□ 1.03
SNX3O60493 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.5■■□□□ 1.03
SNX3O60493 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SNX3O60493 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
SNX3O60493 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SNX3O60493 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SNX3O60493 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.49■■□□□ 1.03
SNX3O60493 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.49■■□□□ 1.03
SNX3O60493 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SNX3O60493 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.49■■□□□ 1.03
SNX3O60493 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SNX3O60493 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SNX3O60493 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SNX3O60493 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SNX3O60493 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SNX3O60493 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
SNX3O60493 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SNX3O60493 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SNX3O60493 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
SNX3O60493 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SNX3O60493 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
SNX3O60493 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SNX3O60493 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
SNX3O60493 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SNX3O60493 AC018755.3-202ENST00000596210 929 ntBASIC21.48■■□□□ 1.03
SNX3O60493 AC133552.2-201ENST00000619106 1032 ntBASIC21.48■■□□□ 1.03
SNX3O60493 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.48■■□□□ 1.03
SNX3O60493 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SNX3O60493 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SNX3O60493 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.48■■□□□ 1.03
SNX3O60493 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SNX3O60493 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SNX3O60493 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.47■■□□□ 1.03
SNX3O60493 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SNX3O60493 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SNX3O60493 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
SNX3O60493 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.47■■□□□ 1.03
SNX3O60493 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SNX3O60493 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SNX3O60493 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SNX3O60493 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SNX3O60493 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SNX3O60493 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SNX3O60493 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SNX3O60493 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SNX3O60493 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
SNX3O60493 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.45■■□□□ 1.02
SNX3O60493 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 IDNK-203ENST00000405990 629 ntTSL 2 BASIC21.45■■□□□ 1.02
SNX3O60493 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
SNX3O60493 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SNX3O60493 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms