Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SSX4O60224 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.66■□□□□ 0.74
SSX4O60224 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.66■□□□□ 0.74
SSX4O60224 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.66■□□□□ 0.74
SSX4O60224 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.66■□□□□ 0.74
SSX4O60224 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX4O60224 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SSX4O60224 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.65■□□□□ 0.74
SSX4O60224 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SSX4O60224 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX4O60224 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SSX4O60224 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX4O60224 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX4O60224 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX4O60224 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.65■□□□□ 0.74
SSX4O60224 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.65■□□□□ 0.74
SSX4O60224 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SSX4O60224 MIR6722-201ENST00000617286 78 ntBASIC19.65■□□□□ 0.74
SSX4O60224 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX4O60224 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SSX4O60224 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.65■□□□□ 0.74
SSX4O60224 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SSX4O60224 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.64■□□□□ 0.74
SSX4O60224 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.64■□□□□ 0.74
SSX4O60224 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SSX4O60224 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
SSX4O60224 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX4O60224 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.64■□□□□ 0.73
SSX4O60224 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.64■□□□□ 0.73
SSX4O60224 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX4O60224 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.64■□□□□ 0.73
SSX4O60224 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SSX4O60224 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SSX4O60224 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.64■□□□□ 0.73
SSX4O60224 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SSX4O60224 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
SSX4O60224 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC19.63■□□□□ 0.73
SSX4O60224 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.63■□□□□ 0.73
SSX4O60224 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.63■□□□□ 0.73
SSX4O60224 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.63■□□□□ 0.73
SSX4O60224 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
SSX4O60224 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SSX4O60224 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.63■□□□□ 0.73
SSX4O60224 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.63■□□□□ 0.73
SSX4O60224 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SSX4O60224 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX4O60224 AL391422.3-201ENST00000603791 2761 ntBASIC19.62■□□□□ 0.73
SSX4O60224 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC19.62■□□□□ 0.73
SSX4O60224 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SSX4O60224 PBX2P1-201ENST00000493219 1291 ntBASIC19.62■□□□□ 0.73
SSX4O60224 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.62■□□□□ 0.73
SSX4O60224 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SSX4O60224 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SSX4O60224 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.62■□□□□ 0.73
SSX4O60224 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SSX4O60224 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SSX4O60224 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.62■□□□□ 0.73
SSX4O60224 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.61■□□□□ 0.73
SSX4O60224 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.61■□□□□ 0.73
SSX4O60224 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.61■□□□□ 0.73
SSX4O60224 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
SSX4O60224 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SSX4O60224 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX4O60224 C11orf96-202ENST00000528572 1834 ntBASIC19.6■□□□□ 0.73
SSX4O60224 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SSX4O60224 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.6■□□□□ 0.73
SSX4O60224 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SSX4O60224 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
SSX4O60224 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.6■□□□□ 0.73
SSX4O60224 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.59■□□□□ 0.73
SSX4O60224 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.59■□□□□ 0.73
SSX4O60224 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SSX4O60224 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SSX4O60224 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SSX4O60224 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
SSX4O60224 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
SSX4O60224 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms