Protein–RNA interactions for Protein: A6NFN3

RBFOX3, RNA binding protein fox-1 homolog 3, humanhuman

Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX3A6NFN3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RBFOX3A6NFN3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 AF106564.1-201ENST00000607058 2553 ntBASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 ABHD17AP4-201ENST00000411545 909 ntBASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
RBFOX3A6NFN3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 FEM1AP4-201ENST00000443167 1987 ntBASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
RBFOX3A6NFN3 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RBFOX3A6NFN3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
RBFOX3A6NFN3 Z98882.1-201ENST00000622160 2253 ntBASIC17.21■□□□□ 0.34
RBFOX3A6NFN3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
RBFOX3A6NFN3 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
RBFOX3A6NFN3 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 SMPD5-203ENST00000639008 1464 ntBASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 HES6-205ENST00000409356 528 ntTSL 2 BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 AL157400.5-201ENST00000507624 621 ntBASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RBFOX3A6NFN3 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 DUX4L11-201ENST00000611504 1267 ntBASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 DUX4L12-201ENST00000614593 1267 ntBASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 DUX4L14-201ENST00000621227 1267 ntBASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC17.18■□□□□ 0.34
RBFOX3A6NFN3 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms