Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
TRIM39Q9HCM9 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 RBM38-205ENST00000440234 686 ntTSL 2 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRIM39Q9HCM9 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 TSPY26P-201ENST00000476365 1326 ntBASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.68■■□□□ 1.06
TRIM39Q9HCM9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
TRIM39Q9HCM9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 IRS3P-201ENST00000223076 1006 ntBASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.66■■□□□ 1.06
TRIM39Q9HCM9 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRIM39Q9HCM9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TRIM39Q9HCM9 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 AC087239.1-201ENST00000622671 572 ntBASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRIM39Q9HCM9 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 AC133561.1-201ENST00000568600 2415 ntBASIC21.63■■□□□ 1.05
TRIM39Q9HCM9 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 AC010141.3-201ENST00000456659 717 ntBASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 LINC01960-201ENST00000563759 1884 ntBASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRIM39Q9HCM9 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms