Protein–RNA interactions for Protein: Q9H3E2

SNX25, Sorting nexin-25, humanhuman

Predictions only

Length 840 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX25Q9H3E2 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SNX25Q9H3E2 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
SNX25Q9H3E2 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC23.36■■□□□ 1.33
SNX25Q9H3E2 LINC01960-201ENST00000563759 1884 ntBASIC23.36■■□□□ 1.33
SNX25Q9H3E2 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC23.35■■□□□ 1.33
SNX25Q9H3E2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SNX25Q9H3E2 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
SNX25Q9H3E2 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
SNX25Q9H3E2 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.35■■□□□ 1.33
SNX25Q9H3E2 AC010141.3-201ENST00000456659 717 ntBASIC23.35■■□□□ 1.33
SNX25Q9H3E2 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.35■■□□□ 1.33
SNX25Q9H3E2 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.35■■□□□ 1.33
SNX25Q9H3E2 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC23.35■■□□□ 1.33
SNX25Q9H3E2 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC23.34■■□□□ 1.33
SNX25Q9H3E2 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
SNX25Q9H3E2 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.33■■□□□ 1.33
SNX25Q9H3E2 RARA-203ENST00000394086 2008 ntTSL 2 BASIC23.33■■□□□ 1.33
SNX25Q9H3E2 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC23.33■■□□□ 1.33
SNX25Q9H3E2 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC23.33■■□□□ 1.33
SNX25Q9H3E2 MIR572-201ENST00000384983 95 ntBASIC23.33■■□□□ 1.33
SNX25Q9H3E2 MIR935-201ENST00000401179 91 ntBASIC23.33■■□□□ 1.33
SNX25Q9H3E2 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
SNX25Q9H3E2 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC23.33■■□□□ 1.33
SNX25Q9H3E2 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.32
SNX25Q9H3E2 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SNX25Q9H3E2 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
SNX25Q9H3E2 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.32
SNX25Q9H3E2 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
SNX25Q9H3E2 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.31■■□□□ 1.32
SNX25Q9H3E2 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SNX25Q9H3E2 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
SNX25Q9H3E2 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC23.3■■□□□ 1.32
SNX25Q9H3E2 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
SNX25Q9H3E2 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC23.3■■□□□ 1.32
SNX25Q9H3E2 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC23.3■■□□□ 1.32
SNX25Q9H3E2 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 NME4-202ENST00000382940 766 ntTSL 3 BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 NME4-211ENST00000620944 1193 ntTSL 2 BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
SNX25Q9H3E2 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
SNX25Q9H3E2 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
SNX25Q9H3E2 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms