Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 DUX4L19-201ENST00000557448 1267 ntBASIC18.23■□□□□ 0.51
SSX3Q99909 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC18.23■□□□□ 0.51
SSX3Q99909 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SSX3Q99909 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX3Q99909 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SSX3Q99909 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
SSX3Q99909 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX3Q99909 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SSX3Q99909 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SSX3Q99909 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.22■□□□□ 0.51
SSX3Q99909 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SSX3Q99909 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX3Q99909 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX3Q99909 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX3Q99909 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX3Q99909 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SSX3Q99909 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.22■□□□□ 0.51
SSX3Q99909 AC138932.1-201ENST00000534164 6830 ntBASIC18.22■□□□□ 0.51
SSX3Q99909 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SSX3Q99909 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SSX3Q99909 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SSX3Q99909 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SSX3Q99909 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SSX3Q99909 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 AL136162.1-201ENST00000607711 1078 ntBASIC18.21■□□□□ 0.51
SSX3Q99909 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
SSX3Q99909 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
SSX3Q99909 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SSX3Q99909 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.21■□□□□ 0.5
SSX3Q99909 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.2■□□□□ 0.5
SSX3Q99909 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.2■□□□□ 0.5
SSX3Q99909 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SSX3Q99909 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX3Q99909 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SSX3Q99909 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC18.2■□□□□ 0.5
SSX3Q99909 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC18.2■□□□□ 0.5
SSX3Q99909 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.2■□□□□ 0.5
SSX3Q99909 AC099791.2-201ENST00000605725 427 ntBASIC18.2■□□□□ 0.5
SSX3Q99909 AC106739.1-201ENST00000617035 715 ntBASIC18.2■□□□□ 0.5
SSX3Q99909 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.2■□□□□ 0.5
SSX3Q99909 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SSX3Q99909 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.2■□□□□ 0.5
SSX3Q99909 SYT6-210ENST00000641643 1587 ntBASIC18.2■□□□□ 0.5
SSX3Q99909 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.2■□□□□ 0.5
SSX3Q99909 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 AC133561.4-201ENST00000566112 224 ntBASIC18.19■□□□□ 0.5
SSX3Q99909 AC005837.3-201ENST00000612163 286 ntBASIC18.19■□□□□ 0.5
SSX3Q99909 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 AC004812.2-201ENST00000611079 2094 ntBASIC18.19■□□□□ 0.5
SSX3Q99909 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
SSX3Q99909 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.19■□□□□ 0.5
SSX3Q99909 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 AC135279.3-201ENST00000610945 1311 ntBASIC18.19■□□□□ 0.5
SSX3Q99909 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SSX3Q99909 C17orf82-201ENST00000623772 1530 ntBASIC18.18■□□□□ 0.5
SSX3Q99909 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.18■□□□□ 0.5
SSX3Q99909 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SSX3Q99909 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.18■□□□□ 0.5
SSX3Q99909 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC18.18■□□□□ 0.5
SSX3Q99909 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX3Q99909 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SSX3Q99909 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX3Q99909 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX3Q99909 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX3Q99909 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.18■□□□□ 0.5
SSX3Q99909 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX3Q99909 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC18.18■□□□□ 0.5
SSX3Q99909 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SSX3Q99909 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SSX3Q99909 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SSX3Q99909 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SSX3Q99909 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms