Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
COL12A1Q99715 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL12A1Q99715 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL12A1Q99715 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.42■□□□□ 0.7
COL12A1Q99715 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.42■□□□□ 0.7
COL12A1Q99715 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.42■□□□□ 0.7
COL12A1Q99715 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC19.42■□□□□ 0.7
COL12A1Q99715 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.42■□□□□ 0.7
COL12A1Q99715 KRT18P21-201ENST00000515767 1272 ntBASIC19.42■□□□□ 0.7
COL12A1Q99715 LINC01023-201ENST00000606054 436 ntBASIC19.42■□□□□ 0.7
COL12A1Q99715 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL12A1Q99715 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.42■□□□□ 0.7
COL12A1Q99715 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.41■□□□□ 0.7
COL12A1Q99715 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.41■□□□□ 0.7
COL12A1Q99715 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
COL12A1Q99715 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL12A1Q99715 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
COL12A1Q99715 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.4■□□□□ 0.7
COL12A1Q99715 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.4■□□□□ 0.7
COL12A1Q99715 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
COL12A1Q99715 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
COL12A1Q99715 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC19.4■□□□□ 0.7
COL12A1Q99715 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL12A1Q99715 RARRES2P4-201ENST00000514074 484 ntBASIC19.4■□□□□ 0.7
COL12A1Q99715 ESRRAP1-201ENST00000400596 1257 ntBASIC19.39■□□□□ 0.69
COL12A1Q99715 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL12A1Q99715 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.39■□□□□ 0.69
COL12A1Q99715 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.39■□□□□ 0.69
COL12A1Q99715 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.39■□□□□ 0.69
COL12A1Q99715 MIR4758-201ENST00000577688 71 ntBASIC19.39■□□□□ 0.69
COL12A1Q99715 AC104187.1-201ENST00000607510 612 ntBASIC19.39■□□□□ 0.69
COL12A1Q99715 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL12A1Q99715 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
COL12A1Q99715 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL12A1Q99715 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.38■□□□□ 0.69
COL12A1Q99715 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL12A1Q99715 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.38■□□□□ 0.69
COL12A1Q99715 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.38■□□□□ 0.69
COL12A1Q99715 MKRN4P-201ENST00000444706 1521 ntBASIC19.38■□□□□ 0.69
COL12A1Q99715 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.38■□□□□ 0.69
COL12A1Q99715 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL12A1Q99715 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.38■□□□□ 0.69
COL12A1Q99715 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.38■□□□□ 0.69
COL12A1Q99715 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.38■□□□□ 0.69
COL12A1Q99715 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.38■□□□□ 0.69
COL12A1Q99715 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.38■□□□□ 0.69
COL12A1Q99715 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.38■□□□□ 0.69
COL12A1Q99715 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL12A1Q99715 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL12A1Q99715 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.37■□□□□ 0.69
COL12A1Q99715 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL12A1Q99715 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL12A1Q99715 AC142381.4-202ENST00000563973 229 ntBASIC19.37■□□□□ 0.69
COL12A1Q99715 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL12A1Q99715 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL12A1Q99715 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL12A1Q99715 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.37■□□□□ 0.69
COL12A1Q99715 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL12A1Q99715 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL12A1Q99715 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL12A1Q99715 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.37■□□□□ 0.69
COL12A1Q99715 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.37■□□□□ 0.69
COL12A1Q99715 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.37■□□□□ 0.69
COL12A1Q99715 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL12A1Q99715 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.36■□□□□ 0.69
COL12A1Q99715 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
COL12A1Q99715 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL12A1Q99715 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.36■□□□□ 0.69
COL12A1Q99715 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL12A1Q99715 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
COL12A1Q99715 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL12A1Q99715 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL12A1Q99715 UNC93B5-201ENST00000530315 699 ntBASIC19.36■□□□□ 0.69
COL12A1Q99715 AC073648.6-201ENST00000641589 218 ntBASIC19.36■□□□□ 0.69
COL12A1Q99715 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL12A1Q99715 MIR4497-201ENST00000583208 89 ntBASIC19.36■□□□□ 0.69
COL12A1Q99715 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
COL12A1Q99715 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL12A1Q99715 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL12A1Q99715 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
COL12A1Q99715 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.35■□□□□ 0.69
COL12A1Q99715 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms