Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 NTF6G-201ENST00000591094 616 ntBASIC6.7□□□□□ -1.34
SYNE1Q8NF91 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 BID-214ENST00000617586 542 ntTSL 5 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 AK1-201ENST00000223836 736 ntTSL 3 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 AC080038.1-201ENST00000611274 1154 ntBASIC6.69□□□□□ -1.34
SYNE1Q8NF91 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SYNE1Q8NF91 AC016769.1-201ENST00000409132 1010 ntBASIC6.69□□□□□ -1.34
SYNE1Q8NF91 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 PKD1P6-201ENST00000343738 4769 ntBASIC6.68□□□□□ -1.34
SYNE1Q8NF91 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 GXYLT1P2-201ENST00000433312 1230 ntBASIC6.68□□□□□ -1.34
SYNE1Q8NF91 TPRG1LP1-201ENST00000598702 760 ntBASIC6.68□□□□□ -1.34
SYNE1Q8NF91 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 AC138932.3-201ENST00000567634 1902 ntBASIC6.68□□□□□ -1.34
SYNE1Q8NF91 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 CCDC92B-201ENST00000575506 885 ntBASIC6.68□□□□□ -1.34
SYNE1Q8NF91 RARA-203ENST00000394086 2008 ntTSL 2 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 AC010525.1-201ENST00000585559 441 ntBASIC6.68□□□□□ -1.34
SYNE1Q8NF91 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 AC141586.4-201ENST00000624558 1573 ntBASIC6.68□□□□□ -1.34
SYNE1Q8NF91 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC6.68□□□□□ -1.34
SYNE1Q8NF91 AL354811.1-201ENST00000610286 706 ntBASIC6.68□□□□□ -1.34
SYNE1Q8NF91 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms