Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
BEST3Q8N1M1 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BEST3Q8N1M1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
BEST3Q8N1M1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
BEST3Q8N1M1 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BEST3Q8N1M1 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
BEST3Q8N1M1 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.29■□□□□ 0.84
BEST3Q8N1M1 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
BEST3Q8N1M1 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
BEST3Q8N1M1 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 AC034268.1-201ENST00000441047 882 ntBASIC20.28■□□□□ 0.84
BEST3Q8N1M1 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
BEST3Q8N1M1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
BEST3Q8N1M1 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.27■□□□□ 0.83
BEST3Q8N1M1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
BEST3Q8N1M1 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 AC105233.4-201ENST00000642045 216 ntBASIC20.26■□□□□ 0.83
BEST3Q8N1M1 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
BEST3Q8N1M1 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
BEST3Q8N1M1 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
BEST3Q8N1M1 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
BEST3Q8N1M1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
BEST3Q8N1M1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.25■□□□□ 0.83
BEST3Q8N1M1 AC123595.1-201ENST00000440769 1046 ntBASIC20.25■□□□□ 0.83
BEST3Q8N1M1 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
BEST3Q8N1M1 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.25■□□□□ 0.83
BEST3Q8N1M1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
BEST3Q8N1M1 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 DUX4L2-201ENST00000561772 1275 ntBASIC20.23■□□□□ 0.83
BEST3Q8N1M1 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
BEST3Q8N1M1 DUX4L6-201ENST00000626483 1275 ntBASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms