Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF549Q6P9A3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 AC133637.1-201ENST00000624115 1537 ntBASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF549Q6P9A3 LINC00565-201ENST00000562710 2331 ntBASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 MIR3181-201ENST00000578512 73 ntBASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZNF549Q6P9A3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 AC137767.1-201ENST00000602918 1920 ntBASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 SRD5A1P1-201ENST00000442297 786 ntBASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.73■■□□□ 1.07
ZNF549Q6P9A3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZNF549Q6P9A3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF549Q6P9A3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF549Q6P9A3 AC131281.2-201ENST00000520478 145 ntBASIC21.71■■□□□ 1.07
ZNF549Q6P9A3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.71■■□□□ 1.07
ZNF549Q6P9A3 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
ZNF549Q6P9A3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
ZNF549Q6P9A3 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF549Q6P9A3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
ZNF549Q6P9A3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
ZNF549Q6P9A3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 CA15P2-201ENST00000611168 834 ntBASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
ZNF549Q6P9A3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 AC092053.2-201ENST00000640557 1818 ntBASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
ZNF549Q6P9A3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms