Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
PDLIM3Q53GG5 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
PDLIM3Q53GG5 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 LINC00565-201ENST00000562710 2331 ntBASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.03■□□□□ 0.48
PDLIM3Q53GG5 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM3Q53GG5 AC242852.2-201ENST00000615738 1807 ntBASIC18.02■□□□□ 0.47
PDLIM3Q53GG5 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
PDLIM3Q53GG5 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 EDA-201ENST00000338901 1233 ntBASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 AL355001.2-201ENST00000620617 1191 ntBASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 AC137767.1-201ENST00000602918 1920 ntBASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM3Q53GG5 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18■□□□□ 0.47
PDLIM3Q53GG5 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM3Q53GG5 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM3Q53GG5 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM3Q53GG5 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM3Q53GG5 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM3Q53GG5 UNC93B3-201ENST00000308076 687 ntBASIC18■□□□□ 0.47
PDLIM3Q53GG5 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM3Q53GG5 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM3Q53GG5 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18■□□□□ 0.47
PDLIM3Q53GG5 AL136162.1-201ENST00000607711 1078 ntBASIC18■□□□□ 0.47
PDLIM3Q53GG5 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18■□□□□ 0.47
PDLIM3Q53GG5 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 AC079630.1-202ENST00000618127 1840 ntBASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC17.99■□□□□ 0.47
PDLIM3Q53GG5 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms