Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ZNF404Q494X3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.78■□□□□ 0.76
ZNF404Q494X3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ZNF404Q494X3 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ZNF404Q494X3 AC080038.3-201ENST00000623346 1952 ntBASIC19.77■□□□□ 0.76
ZNF404Q494X3 RNF165-205ENST00000588679 2904 ntBASIC19.77■□□□□ 0.76
ZNF404Q494X3 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ZNF404Q494X3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZNF404Q494X3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
ZNF404Q494X3 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.77■□□□□ 0.75
ZNF404Q494X3 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF404Q494X3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
ZNF404Q494X3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
ZNF404Q494X3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF404Q494X3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.76■□□□□ 0.75
ZNF404Q494X3 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF404Q494X3 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
ZNF404Q494X3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC19.76■□□□□ 0.75
ZNF404Q494X3 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ZNF404Q494X3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF404Q494X3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
ZNF404Q494X3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
ZNF404Q494X3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
ZNF404Q494X3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
ZNF404Q494X3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF404Q494X3 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF404Q494X3 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF404Q494X3 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.75■□□□□ 0.75
ZNF404Q494X3 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.75■□□□□ 0.75
ZNF404Q494X3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
ZNF404Q494X3 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF404Q494X3 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.75■□□□□ 0.75
ZNF404Q494X3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.75■□□□□ 0.75
ZNF404Q494X3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF404Q494X3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
ZNF404Q494X3 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
ZNF404Q494X3 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.74■□□□□ 0.75
ZNF404Q494X3 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 AL031848.2-201ENST00000607670 837 ntBASIC19.74■□□□□ 0.75
ZNF404Q494X3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
ZNF404Q494X3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC19.73■□□□□ 0.75
ZNF404Q494X3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF404Q494X3 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
ZNF404Q494X3 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF404Q494X3 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.73■□□□□ 0.75
ZNF404Q494X3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF404Q494X3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF404Q494X3 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
ZNF404Q494X3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF404Q494X3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
ZNF404Q494X3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
ZNF404Q494X3 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC19.72■□□□□ 0.75
ZNF404Q494X3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF404Q494X3 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.72■□□□□ 0.75
ZNF404Q494X3 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF404Q494X3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF404Q494X3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF404Q494X3 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF404Q494X3 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF404Q494X3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF404Q494X3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
ZNF404Q494X3 AL451085.2-201ENST00000605085 799 ntBASIC19.72■□□□□ 0.75
ZNF404Q494X3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.72■□□□□ 0.75
ZNF404Q494X3 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
ZNF404Q494X3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.71■□□□□ 0.75
ZNF404Q494X3 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
ZNF404Q494X3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
ZNF404Q494X3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
ZNF404Q494X3 KRT18P24-201ENST00000344739 1156 ntBASIC19.71■□□□□ 0.75
ZNF404Q494X3 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.71■□□□□ 0.75
ZNF404Q494X3 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
ZNF404Q494X3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.7■□□□□ 0.74
ZNF404Q494X3 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
ZNF404Q494X3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms