Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 pRNA.6-201ENST00000610482 90 ntBASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 pRNA.5-201ENST00000612139 90 ntBASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 pRNA.11-201ENST00000618423 90 ntBASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 pRNA.13-201ENST00000619112 90 ntBASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 AC087742.1-201ENST00000575880 1738 ntBASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.02
PTCHD3Q3KNS1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
PTCHD3Q3KNS1 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
PTCHD3Q3KNS1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
PTCHD3Q3KNS1 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD3Q3KNS1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD3Q3KNS1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD3Q3KNS1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
PTCHD3Q3KNS1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 LINC01960-201ENST00000563759 1884 ntBASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 AP001330.3-201ENST00000520123 633 ntBASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 AC133637.1-201ENST00000624115 1537 ntBASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 AC127496.7-201ENST00000625110 1798 ntBASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
PTCHD3Q3KNS1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 MIR3181-201ENST00000578512 73 ntBASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 AL136967.2-201ENST00000623968 743 ntBASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.36■■□□□ 1.01
PTCHD3Q3KNS1 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
PTCHD3Q3KNS1 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD3Q3KNS1 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD3Q3KNS1 MIR939-201ENST00000401314 82 ntBASIC21.34■■□□□ 1.01
PTCHD3Q3KNS1 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
PTCHD3Q3KNS1 AC011298.3-201ENST00000615796 283 ntBASIC21.34■■□□□ 1.01
PTCHD3Q3KNS1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD3Q3KNS1 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
PTCHD3Q3KNS1 EP400NL-214ENST00000641289 2402 ntBASIC21.34■■□□□ 1.01
PTCHD3Q3KNS1 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 AC105265.2-201ENST00000467189 838 ntBASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 AL138724.1-201ENST00000606771 1088 ntBASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.33■■□□□ 1.01
PTCHD3Q3KNS1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
PTCHD3Q3KNS1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.32■■□□□ 1
PTCHD3Q3KNS1 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms