Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIMK1P53667 FAM201B-201ENST00000458407 597 ntBASIC21.75■■□□□ 1.07
LIMK1P53667 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
LIMK1P53667 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.75■■□□□ 1.07
LIMK1P53667 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIMK1P53667 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIMK1P53667 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.75■■□□□ 1.07
LIMK1P53667 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIMK1P53667 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
LIMK1P53667 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
LIMK1P53667 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
LIMK1P53667 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LIMK1P53667 TSPY6P-201ENST00000448518 926 ntBASIC21.74■■□□□ 1.07
LIMK1P53667 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.74■■□□□ 1.07
LIMK1P53667 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.74■■□□□ 1.07
LIMK1P53667 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.74■■□□□ 1.07
LIMK1P53667 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
LIMK1P53667 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIMK1P53667 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LIMK1P53667 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LIMK1P53667 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
LIMK1P53667 DET1-205ENST00000558413 583 ntTSL 4 BASIC21.73■■□□□ 1.07
LIMK1P53667 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIMK1P53667 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
LIMK1P53667 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
LIMK1P53667 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
LIMK1P53667 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.73■■□□□ 1.07
LIMK1P53667 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
LIMK1P53667 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.72■■□□□ 1.07
LIMK1P53667 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
LIMK1P53667 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIMK1P53667 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIMK1P53667 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.72■■□□□ 1.07
LIMK1P53667 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.72■■□□□ 1.07
LIMK1P53667 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
LIMK1P53667 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
LIMK1P53667 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIMK1P53667 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIMK1P53667 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIMK1P53667 AC083906.2-201ENST00000511578 360 ntBASIC21.71■■□□□ 1.07
LIMK1P53667 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.71■■□□□ 1.07
LIMK1P53667 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.71■■□□□ 1.07
LIMK1P53667 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LIMK1P53667 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.71■■□□□ 1.07
LIMK1P53667 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIMK1P53667 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.71■■□□□ 1.07
LIMK1P53667 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LIMK1P53667 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIMK1P53667 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIMK1P53667 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIMK1P53667 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIMK1P53667 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LIMK1P53667 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.7■■□□□ 1.06
LIMK1P53667 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.7■■□□□ 1.06
LIMK1P53667 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.7■■□□□ 1.06
LIMK1P53667 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.7■■□□□ 1.06
LIMK1P53667 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.7■■□□□ 1.06
LIMK1P53667 MIR4651-201ENST00000582622 73 ntBASIC21.7■■□□□ 1.06
LIMK1P53667 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.7■■□□□ 1.06
LIMK1P53667 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.7■■□□□ 1.06
LIMK1P53667 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIMK1P53667 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LIMK1P53667 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMK1P53667 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMK1P53667 AC068473.5-201ENST00000616428 2072 ntBASIC21.69■■□□□ 1.06
LIMK1P53667 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMK1P53667 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
LIMK1P53667 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
LIMK1P53667 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.69■■□□□ 1.06
LIMK1P53667 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMK1P53667 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.69■■□□□ 1.06
LIMK1P53667 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMK1P53667 ALDH1A3-203ENST00000557963 1670 ntBASIC21.69■■□□□ 1.06
LIMK1P53667 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
LIMK1P53667 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
LIMK1P53667 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
LIMK1P53667 GUSBP6-202ENST00000438529 1198 ntBASIC21.68■■□□□ 1.06
LIMK1P53667 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.68■■□□□ 1.06
LIMK1P53667 SLC7A5P2-201ENST00000553010 536 ntBASIC21.68■■□□□ 1.06
LIMK1P53667 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 AL050303.2-201ENST00000619798 666 ntBASIC21.68■■□□□ 1.06
LIMK1P53667 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.68■■□□□ 1.06
LIMK1P53667 FP325331.1-202ENST00000623531 1380 ntBASIC21.68■■□□□ 1.06
LIMK1P53667 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMK1P53667 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMK1P53667 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMK1P53667 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMK1P53667 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.67■■□□□ 1.06
LIMK1P53667 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LIMK1P53667 BX005040.4-201ENST00000637145 1518 ntBASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms