Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.49■□□□□ 0.87
RFX3P48380 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX3P48380 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RFX3P48380 AC008406.3-201ENST00000620001 1374 ntBASIC20.48■□□□□ 0.87
RFX3P48380 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX3P48380 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX3P48380 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.48■□□□□ 0.87
RFX3P48380 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX3P48380 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
RFX3P48380 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
RFX3P48380 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX3P48380 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RFX3P48380 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFX3P48380 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
RFX3P48380 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFX3P48380 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFX3P48380 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFX3P48380 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.47■□□□□ 0.87
RFX3P48380 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RFX3P48380 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFX3P48380 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.47■□□□□ 0.87
RFX3P48380 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RFX3P48380 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RFX3P48380 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.46■□□□□ 0.87
RFX3P48380 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RFX3P48380 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
RFX3P48380 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX3P48380 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.46■□□□□ 0.87
RFX3P48380 AC233723.2-201ENST00000623798 2106 ntBASIC20.46■□□□□ 0.87
RFX3P48380 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX3P48380 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX3P48380 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX3P48380 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.46■□□□□ 0.87
RFX3P48380 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
RFX3P48380 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
RFX3P48380 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 AC092171.4-201ENST00000609130 632 ntBASIC20.45■□□□□ 0.86
RFX3P48380 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
RFX3P48380 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.45■□□□□ 0.86
RFX3P48380 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX3P48380 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFX3P48380 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX3P48380 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.44■□□□□ 0.86
RFX3P48380 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
RFX3P48380 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.44■□□□□ 0.86
RFX3P48380 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX3P48380 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFX3P48380 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.44■□□□□ 0.86
RFX3P48380 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.44■□□□□ 0.86
RFX3P48380 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX3P48380 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX3P48380 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX3P48380 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.44■□□□□ 0.86
RFX3P48380 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX3P48380 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFX3P48380 SYT6-210ENST00000641643 1587 ntBASIC20.43■□□□□ 0.86
RFX3P48380 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFX3P48380 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFX3P48380 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.43■□□□□ 0.86
RFX3P48380 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFX3P48380 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.43■□□□□ 0.86
RFX3P48380 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFX3P48380 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.43■□□□□ 0.86
RFX3P48380 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
RFX3P48380 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.43■□□□□ 0.86
RFX3P48380 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFX3P48380 AL117328.2-201ENST00000624617 1940 ntBASIC20.43■□□□□ 0.86
RFX3P48380 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFX3P48380 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFX3P48380 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
RFX3P48380 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.43■□□□□ 0.86
RFX3P48380 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
RFX3P48380 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.42■□□□□ 0.86
RFX3P48380 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.42■□□□□ 0.86
RFX3P48380 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.42■□□□□ 0.86
RFX3P48380 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFX3P48380 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.42■□□□□ 0.86
RFX3P48380 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.41■□□□□ 0.86
RFX3P48380 MIR3181-201ENST00000578512 73 ntBASIC20.41■□□□□ 0.86
RFX3P48380 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
RFX3P48380 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFX3P48380 AC133637.1-201ENST00000624115 1537 ntBASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms