Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HOXC12P31275 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC12P31275 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.36■□□□□ 0.69
HOXC12P31275 OR2I1P-207ENST00000453522 948 ntBASIC19.36■□□□□ 0.69
HOXC12P31275 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC12P31275 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.36■□□□□ 0.69
HOXC12P31275 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC12P31275 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.36■□□□□ 0.69
HOXC12P31275 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HOXC12P31275 AC004687.1-201ENST00000579003 1625 ntBASIC19.36■□□□□ 0.69
HOXC12P31275 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.35■□□□□ 0.69
HOXC12P31275 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC12P31275 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC12P31275 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.35■□□□□ 0.69
HOXC12P31275 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.35■□□□□ 0.69
HOXC12P31275 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC12P31275 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC12P31275 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC12P31275 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HOXC12P31275 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
HOXC12P31275 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC12P31275 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC12P31275 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC12P31275 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC12P31275 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HOXC12P31275 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXC12P31275 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC12P31275 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC12P31275 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC19.34■□□□□ 0.69
HOXC12P31275 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC12P31275 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
HOXC12P31275 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC19.34■□□□□ 0.69
HOXC12P31275 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC12P31275 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
HOXC12P31275 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
HOXC12P31275 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC12P31275 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HOXC12P31275 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.33■□□□□ 0.69
HOXC12P31275 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC12P31275 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXC12P31275 SLC47A1P1-202ENST00000449666 945 ntBASIC19.33■□□□□ 0.68
HOXC12P31275 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.33■□□□□ 0.68
HOXC12P31275 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC12P31275 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
HOXC12P31275 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.33■□□□□ 0.68
HOXC12P31275 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.33■□□□□ 0.68
HOXC12P31275 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.33■□□□□ 0.68
HOXC12P31275 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
HOXC12P31275 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
HOXC12P31275 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.33■□□□□ 0.68
HOXC12P31275 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
HOXC12P31275 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC12P31275 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
HOXC12P31275 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC12P31275 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC12P31275 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC12P31275 KRT18P5-201ENST00000436075 1291 ntBASIC19.32■□□□□ 0.68
HOXC12P31275 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.32■□□□□ 0.68
HOXC12P31275 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HOXC12P31275 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HOXC12P31275 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HOXC12P31275 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HOXC12P31275 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
HOXC12P31275 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC12P31275 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC12P31275 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC12P31275 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.31■□□□□ 0.68
HOXC12P31275 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC12P31275 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC12P31275 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.31■□□□□ 0.68
HOXC12P31275 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.31■□□□□ 0.68
HOXC12P31275 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC12P31275 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
HOXC12P31275 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC12P31275 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC12P31275 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HOXC12P31275 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
HOXC12P31275 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC12P31275 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC12P31275 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HOXC12P31275 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
HOXC12P31275 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC12P31275 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.3■□□□□ 0.68
HOXC12P31275 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC12P31275 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.3■□□□□ 0.68
HOXC12P31275 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.3■□□□□ 0.68
HOXC12P31275 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.3■□□□□ 0.68
HOXC12P31275 AC087239.1-201ENST00000622671 572 ntBASIC19.3■□□□□ 0.68
HOXC12P31275 AC092437.1-201ENST00000624794 1048 ntBASIC19.3■□□□□ 0.68
HOXC12P31275 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC12P31275 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC12P31275 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.3■□□□□ 0.68
HOXC12P31275 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC12P31275 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HOXC12P31275 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC12P31275 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC12P31275 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
HOXC12P31275 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HOXC12P31275 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC12P31275 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms