Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 BX842568.3-201ENST00000418104 571 ntBASIC20.03■□□□□ 0.8
MSX1P28360 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX1P28360 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.03■□□□□ 0.8
MSX1P28360 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.03■□□□□ 0.8
MSX1P28360 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
MSX1P28360 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.02■□□□□ 0.8
MSX1P28360 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.02■□□□□ 0.8
MSX1P28360 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MSX1P28360 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.02■□□□□ 0.8
MSX1P28360 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.02■□□□□ 0.8
MSX1P28360 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.02■□□□□ 0.8
MSX1P28360 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MSX1P28360 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
MSX1P28360 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.02■□□□□ 0.8
MSX1P28360 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
MSX1P28360 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.02■□□□□ 0.79
MSX1P28360 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.02■□□□□ 0.79
MSX1P28360 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
MSX1P28360 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC20.01■□□□□ 0.79
MSX1P28360 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
MSX1P28360 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.01■□□□□ 0.79
MSX1P28360 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.01■□□□□ 0.79
MSX1P28360 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 ESRRAP2-201ENST00000418437 1549 ntBASIC20.01■□□□□ 0.79
MSX1P28360 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
MSX1P28360 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.01■□□□□ 0.79
MSX1P28360 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSX1P28360 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSX1P28360 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20■□□□□ 0.79
MSX1P28360 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20■□□□□ 0.79
MSX1P28360 AC233992.3-201ENST00000607491 485 ntBASIC20■□□□□ 0.79
MSX1P28360 AL031602.1-201ENST00000633169 911 ntBASIC20■□□□□ 0.79
MSX1P28360 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
MSX1P28360 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
MSX1P28360 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
MSX1P28360 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20■□□□□ 0.79
MSX1P28360 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20■□□□□ 0.79
MSX1P28360 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
MSX1P28360 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX1P28360 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSX1P28360 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.99■□□□□ 0.79
MSX1P28360 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
MSX1P28360 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.99■□□□□ 0.79
MSX1P28360 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.99■□□□□ 0.79
MSX1P28360 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
MSX1P28360 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX1P28360 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX1P28360 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
MSX1P28360 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
MSX1P28360 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSX1P28360 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.98■□□□□ 0.79
MSX1P28360 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
MSX1P28360 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
MSX1P28360 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX1P28360 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX1P28360 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
MSX1P28360 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX1P28360 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.98■□□□□ 0.79
MSX1P28360 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX1P28360 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
MSX1P28360 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
MSX1P28360 SLC47A1P1-202ENST00000449666 945 ntBASIC19.98■□□□□ 0.79
MSX1P28360 AP005435.1-201ENST00000529293 1178 ntBASIC19.98■□□□□ 0.79
MSX1P28360 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.98■□□□□ 0.79
MSX1P28360 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.98■□□□□ 0.79
MSX1P28360 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.98■□□□□ 0.79
MSX1P28360 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
MSX1P28360 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
MSX1P28360 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
MSX1P28360 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC19.97■□□□□ 0.79
MSX1P28360 LINC01960-201ENST00000563759 1884 ntBASIC19.97■□□□□ 0.79
MSX1P28360 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSX1P28360 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.97■□□□□ 0.79
MSX1P28360 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.97■□□□□ 0.79
MSX1P28360 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.97■□□□□ 0.79
MSX1P28360 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
MSX1P28360 AC087239.1-201ENST00000622671 572 ntBASIC19.97■□□□□ 0.79
MSX1P28360 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
MSX1P28360 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.97■□□□□ 0.79
MSX1P28360 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX1P28360 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC19.96■□□□□ 0.79
MSX1P28360 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
MSX1P28360 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.96■□□□□ 0.79
MSX1P28360 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms