Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC16.97■□□□□ 0.31
CXCL1P09341 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
CXCL1P09341 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CXCL1P09341 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.96■□□□□ 0.31
CXCL1P09341 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.96■□□□□ 0.31
CXCL1P09341 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.96■□□□□ 0.31
CXCL1P09341 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.96■□□□□ 0.31
CXCL1P09341 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL1P09341 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.96■□□□□ 0.31
CXCL1P09341 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CXCL1P09341 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL1P09341 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CXCL1P09341 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CXCL1P09341 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
CXCL1P09341 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CXCL1P09341 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC16.95■□□□□ 0.3
CXCL1P09341 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.95■□□□□ 0.3
CXCL1P09341 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.95■□□□□ 0.3
CXCL1P09341 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CXCL1P09341 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.95■□□□□ 0.3
CXCL1P09341 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.95■□□□□ 0.3
CXCL1P09341 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.95■□□□□ 0.3
CXCL1P09341 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC16.95■□□□□ 0.3
CXCL1P09341 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CXCL1P09341 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
CXCL1P09341 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.94■□□□□ 0.3
CXCL1P09341 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.94■□□□□ 0.3
CXCL1P09341 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CXCL1P09341 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL1P09341 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC16.94■□□□□ 0.3
CXCL1P09341 AC093536.1-201ENST00000569153 554 ntBASIC16.94■□□□□ 0.3
CXCL1P09341 AC087289.5-201ENST00000586076 3175 ntBASIC16.94■□□□□ 0.3
CXCL1P09341 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL1P09341 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL1P09341 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL1P09341 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CXCL1P09341 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC16.94■□□□□ 0.3
CXCL1P09341 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CXCL1P09341 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL1P09341 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL1P09341 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CXCL1P09341 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC16.93■□□□□ 0.3
CXCL1P09341 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL1P09341 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CXCL1P09341 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CXCL1P09341 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC16.92■□□□□ 0.3
CXCL1P09341 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.92■□□□□ 0.3
CXCL1P09341 GFER-205ENST00000569451 517 ntTSL 5 BASIC16.92■□□□□ 0.3
CXCL1P09341 AC016575.1-201ENST00000607026 382 ntBASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
CXCL1P09341 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms