Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.79■□□□□ 0.76
HOXD4P09016 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXD4P09016 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXD4P09016 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXD4P09016 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HOXD4P09016 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.79■□□□□ 0.76
HOXD4P09016 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.79■□□□□ 0.76
HOXD4P09016 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXD4P09016 RARRES2P11-201ENST00000635158 484 ntBASIC19.79■□□□□ 0.76
HOXD4P09016 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.79■□□□□ 0.76
HOXD4P09016 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
HOXD4P09016 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HOXD4P09016 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HOXD4P09016 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HOXD4P09016 C9orf163-202ENST00000624034 2573 ntBASIC19.79■□□□□ 0.76
HOXD4P09016 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXD4P09016 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXD4P09016 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXD4P09016 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXD4P09016 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXD4P09016 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXD4P09016 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXD4P09016 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.78■□□□□ 0.76
HOXD4P09016 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.78■□□□□ 0.76
HOXD4P09016 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXD4P09016 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXD4P09016 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXD4P09016 AC068587.7-201ENST00000641602 218 ntBASIC19.78■□□□□ 0.76
HOXD4P09016 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HOXD4P09016 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.78■□□□□ 0.76
HOXD4P09016 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.78■□□□□ 0.76
HOXD4P09016 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HOXD4P09016 AL121603.2-201ENST00000557373 2117 ntBASIC19.78■□□□□ 0.76
HOXD4P09016 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXD4P09016 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXD4P09016 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXD4P09016 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.77■□□□□ 0.76
HOXD4P09016 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.77■□□□□ 0.76
HOXD4P09016 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC19.77■□□□□ 0.76
HOXD4P09016 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXD4P09016 AC090192.1-201ENST00000517740 490 ntBASIC19.77■□□□□ 0.76
HOXD4P09016 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXD4P09016 AC010525.1-201ENST00000585559 441 ntBASIC19.77■□□□□ 0.76
HOXD4P09016 AC022517.1-201ENST00000592429 346 ntBASIC19.77■□□□□ 0.76
HOXD4P09016 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HOXD4P09016 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXD4P09016 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXD4P09016 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HOXD4P09016 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.77■□□□□ 0.76
HOXD4P09016 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.75
HOXD4P09016 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXD4P09016 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXD4P09016 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXD4P09016 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXD4P09016 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.76■□□□□ 0.75
HOXD4P09016 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXD4P09016 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXD4P09016 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HOXD4P09016 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXD4P09016 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HOXD4P09016 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.76■□□□□ 0.75
HOXD4P09016 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HOXD4P09016 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXD4P09016 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXD4P09016 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HOXD4P09016 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.75■□□□□ 0.75
HOXD4P09016 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXD4P09016 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXD4P09016 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXD4P09016 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.75■□□□□ 0.75
HOXD4P09016 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXD4P09016 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HOXD4P09016 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXD4P09016 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HOXD4P09016 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HOXD4P09016 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.75■□□□□ 0.75
HOXD4P09016 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
HOXD4P09016 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXD4P09016 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
HOXD4P09016 KRT18P5-201ENST00000436075 1291 ntBASIC19.74■□□□□ 0.75
HOXD4P09016 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXD4P09016 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
HOXD4P09016 AL137784.2-201ENST00000607332 1000 ntBASIC19.74■□□□□ 0.75
HOXD4P09016 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HOXD4P09016 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.74■□□□□ 0.75
HOXD4P09016 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HOXD4P09016 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
HOXD4P09016 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.74■□□□□ 0.75
HOXD4P09016 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.73■□□□□ 0.75
HOXD4P09016 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXD4P09016 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXD4P09016 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXD4P09016 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXD4P09016 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
HOXD4P09016 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.73■□□□□ 0.75
HOXD4P09016 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXD4P09016 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.73■□□□□ 0.75
HOXD4P09016 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
HOXD4P09016 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.73■□□□□ 0.75
HOXD4P09016 IKBKGP1-201ENST00000612193 1073 ntBASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms