Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC24.73■■□□□ 1.55
MSH4O15457 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC24.73■■□□□ 1.55
MSH4O15457 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
MSH4O15457 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
MSH4O15457 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC24.72■■□□□ 1.55
MSH4O15457 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH4O15457 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH4O15457 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
MSH4O15457 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH4O15457 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC24.72■■□□□ 1.55
MSH4O15457 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC24.72■■□□□ 1.55
MSH4O15457 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH4O15457 LGR4-203ENST00000480977 492 ntTSL 2 BASIC24.72■■□□□ 1.55
MSH4O15457 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.72■■□□□ 1.55
MSH4O15457 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC24.72■■□□□ 1.55
MSH4O15457 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.72■■□□□ 1.55
MSH4O15457 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
MSH4O15457 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH4O15457 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
MSH4O15457 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
MSH4O15457 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC24.72■■□□□ 1.55
MSH4O15457 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
MSH4O15457 RARA-203ENST00000394086 2008 ntTSL 2 BASIC24.71■■□□□ 1.55
MSH4O15457 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH4O15457 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.71■■□□□ 1.55
MSH4O15457 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH4O15457 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC24.71■■□□□ 1.55
MSH4O15457 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
MSH4O15457 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
MSH4O15457 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
MSH4O15457 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC24.71■■□□□ 1.55
MSH4O15457 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
MSH4O15457 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
MSH4O15457 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
MSH4O15457 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
MSH4O15457 MIR572-201ENST00000384983 95 ntBASIC24.7■■□□□ 1.54
MSH4O15457 AC010141.3-201ENST00000456659 717 ntBASIC24.7■■□□□ 1.54
MSH4O15457 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
MSH4O15457 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
MSH4O15457 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
MSH4O15457 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH4O15457 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
MSH4O15457 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
MSH4O15457 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
MSH4O15457 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC24.68■■□□□ 1.54
MSH4O15457 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
MSH4O15457 AC087742.1-201ENST00000575880 1738 ntBASIC24.68■■□□□ 1.54
MSH4O15457 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
MSH4O15457 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 MIR935-201ENST00000401179 91 ntBASIC24.67■■□□□ 1.54
MSH4O15457 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.67■■□□□ 1.54
MSH4O15457 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.67■■□□□ 1.54
MSH4O15457 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
MSH4O15457 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC24.66■■□□□ 1.54
MSH4O15457 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC24.66■■□□□ 1.54
MSH4O15457 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH4O15457 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH4O15457 JTB-203ENST00000368589 1216 ntTSL 2 BASIC24.66■■□□□ 1.54
MSH4O15457 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC24.66■■□□□ 1.54
MSH4O15457 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC24.66■■□□□ 1.54
MSH4O15457 AC087239.1-201ENST00000622671 572 ntBASIC24.66■■□□□ 1.54
MSH4O15457 C1orf229-201ENST00000623686 2258 ntBASIC24.66■■□□□ 1.54
MSH4O15457 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH4O15457 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
MSH4O15457 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
MSH4O15457 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
MSH4O15457 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
MSH4O15457 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH4O15457 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.65■■□□□ 1.54
MSH4O15457 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH4O15457 LHPP-203ENST00000392757 840 ntTSL 3 BASIC24.65■■□□□ 1.54
MSH4O15457 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH4O15457 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC24.65■■□□□ 1.54
MSH4O15457 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.65■■□□□ 1.54
MSH4O15457 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
MSH4O15457 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH4O15457 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC24.65■■□□□ 1.54
MSH4O15457 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
MSH4O15457 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC24.65■■□□□ 1.54
MSH4O15457 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.65■■□□□ 1.54
MSH4O15457 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC24.65■■□□□ 1.54
MSH4O15457 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
MSH4O15457 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
MSH4O15457 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
MSH4O15457 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC24.64■■□□□ 1.54
MSH4O15457 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.64■■□□□ 1.54
MSH4O15457 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC24.64■■□□□ 1.54
MSH4O15457 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.53
MSH4O15457 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC24.64■■□□□ 1.53
MSH4O15457 OXCT2P1-201ENST00000447263 1535 ntBASIC24.64■■□□□ 1.53
MSH4O15457 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
MSH4O15457 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
MSH4O15457 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms