Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A5A8TX70 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.33■□□□□ 0.36
COL6A5A8TX70 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.33■□□□□ 0.36
COL6A5A8TX70 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL6A5A8TX70 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 TMEM202-AS1-202ENST00000565181 2325 ntBASIC17.32■□□□□ 0.36
COL6A5A8TX70 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 UBE2SP1-201ENST00000450587 669 ntBASIC17.32■□□□□ 0.36
COL6A5A8TX70 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.32■□□□□ 0.36
COL6A5A8TX70 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL6A5A8TX70 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A5A8TX70 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A5A8TX70 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 SLC6A10P-202ENST00000431994 2058 ntBASIC17.31■□□□□ 0.36
COL6A5A8TX70 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A5A8TX70 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A5A8TX70 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL6A5A8TX70 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
COL6A5A8TX70 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A5A8TX70 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A5A8TX70 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A5A8TX70 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL6A5A8TX70 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.3■□□□□ 0.36
COL6A5A8TX70 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A5A8TX70 AC010536.3-201ENST00000620306 533 ntBASIC17.3■□□□□ 0.36
COL6A5A8TX70 REXO1L12P-201ENST00000622156 912 ntBASIC17.3■□□□□ 0.36
COL6A5A8TX70 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A5A8TX70 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL6A5A8TX70 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC17.3■□□□□ 0.36
COL6A5A8TX70 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A5A8TX70 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
COL6A5A8TX70 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
COL6A5A8TX70 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A5A8TX70 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL6A5A8TX70 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A5A8TX70 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A5A8TX70 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A5A8TX70 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A5A8TX70 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.29■□□□□ 0.36
COL6A5A8TX70 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A5A8TX70 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A5A8TX70 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A5A8TX70 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A5A8TX70 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC17.29■□□□□ 0.36
COL6A5A8TX70 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL6A5A8TX70 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A5A8TX70 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.29■□□□□ 0.36
COL6A5A8TX70 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL6A5A8TX70 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.28■□□□□ 0.36
COL6A5A8TX70 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC17.28■□□□□ 0.36
COL6A5A8TX70 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC17.28■□□□□ 0.36
COL6A5A8TX70 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.28■□□□□ 0.36
COL6A5A8TX70 BX088651.1-201ENST00000540551 451 ntBASIC17.28■□□□□ 0.36
COL6A5A8TX70 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.28■□□□□ 0.36
COL6A5A8TX70 AC013268.1-206ENST00000638368 961 ntBASIC17.28■□□□□ 0.36
COL6A5A8TX70 AC112229.1-201ENST00000639295 961 ntBASIC17.28■□□□□ 0.36
COL6A5A8TX70 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.28■□□□□ 0.36
COL6A5A8TX70 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.28■□□□□ 0.36
COL6A5A8TX70 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.28■□□□□ 0.36
COL6A5A8TX70 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL6A5A8TX70 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms