Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 RN7SL375P-201ENST00000492442 298 ntBASIC12.37□□□□□ -0.43
CLK1P49759 AC100858.1-201ENST00000514059 1228 ntBASIC12.37□□□□□ -0.43
CLK1P49759 RNA5SP417-201ENST00000516459 108 ntBASIC12.37□□□□□ -0.43
CLK1P49759 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
CLK1P49759 PRKXP1-201ENST00000561423 1122 ntBASIC12.37□□□□□ -0.43
CLK1P49759 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC12.37□□□□□ -0.43
CLK1P49759 NUDT4P2-201ENST00000578341 546 ntBASIC12.37□□□□□ -0.43
CLK1P49759 AC132812.1-201ENST00000583145 892 ntBASIC12.37□□□□□ -0.43
CLK1P49759 HCG18-245ENST00000602550 559 ntTSL 4 BASIC12.37□□□□□ -0.43
CLK1P49759 AC084781.1-201ENST00000613737 656 ntBASIC12.37□□□□□ -0.43
CLK1P49759 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC12.37□□□□□ -0.43
CLK1P49759 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 SGK1-220ENST00000524929 2594 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 ARAP1-209ENST00000455638 2683 ntTSL 5 BASIC12.37□□□□□ -0.43
CLK1P49759 USP5-201ENST00000229268 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 ATP2A3-203ENST00000359983 3290 ntTSL 5 BASIC12.37□□□□□ -0.43
CLK1P49759 PCDHB7-201ENST00000231137 3765 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CLK1P49759 TEF-202ENST00000406644 4386 ntTSL 2 BASIC12.37□□□□□ -0.43
CLK1P49759 TNS2-210ENST00000549700 4525 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CLK1P49759 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 PBOV1-201ENST00000527246 2506 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
CLK1P49759 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 SPCS1-206ENST00000619898 4254 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CLK1P49759 AC117503.4-201ENST00000623229 1418 ntBASIC12.37□□□□□ -0.43
CLK1P49759 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
CLK1P49759 OTOG-202ENST00000399391 8778 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
CLK1P49759 ZIC3-201ENST00000287538 3469 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 PNPLA8-206ENST00000436062 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 LIG1-201ENST00000263274 3384 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 MYO19-203ENST00000610930 3271 ntTSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 RUFY4-202ENST00000374155 2977 ntTSL 2 BASIC12.36□□□□□ -0.43
CLK1P49759 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 TTC4-201ENST00000371281 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 LINC01987-201ENST00000593118 2281 ntTSL 2 BASIC12.36□□□□□ -0.43
CLK1P49759 BCL2L11-223ENST00000622612 4995 ntTSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 PSMD5-201ENST00000210313 3443 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 GAS8-220ENST00000620723 3308 ntTSL 2 BASIC12.36□□□□□ -0.43
CLK1P49759 C9orf3-201ENST00000277198 1966 ntTSL 2 BASIC12.36□□□□□ -0.43
CLK1P49759 FUT6-201ENST00000286955 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 DDC-212ENST00000615193 1674 ntTSL 3 BASIC12.36□□□□□ -0.43
CLK1P49759 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 DOCK4-204ENST00000428084 7997 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 FREM3-201ENST00000329798 6729 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 TRO-201ENST00000173898 4647 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 RNASE7-201ENST00000298690 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 FTLP1-201ENST00000449155 526 ntBASIC12.36□□□□□ -0.43
CLK1P49759 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC12.36□□□□□ -0.43
CLK1P49759 AP000911.2-201ENST00000534330 502 ntBASIC12.36□□□□□ -0.43
CLK1P49759 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC12.36□□□□□ -0.43
CLK1P49759 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC12.36□□□□□ -0.43
CLK1P49759 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
CLK1P49759 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC12.36□□□□□ -0.43
CLK1P49759 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC12.36□□□□□ -0.43
CLK1P49759 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC12.36□□□□□ -0.43
CLK1P49759 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC12.36□□□□□ -0.43
CLK1P49759 AC098650.1-201ENST00000635992 3535 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 ATP2B2-202ENST00000360273 8962 ntTSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 FAM196A-201ENST00000424811 3149 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 EPB42-202ENST00000441366 2374 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
CLK1P49759 CAMTA2-202ENST00000361571 4777 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 CICP18-201ENST00000406017 2812 ntBASIC12.36□□□□□ -0.43
CLK1P49759 YTHDF2-208ENST00000541996 2719 ntTSL 2 BASIC12.36□□□□□ -0.43
CLK1P49759 UBOX5-202ENST00000348031 4469 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CLK1P49759 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
CLK1P49759 LIN28B-203ENST00000637759 2635 ntTSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 DLEU1-231ENST00000490577 2440 ntTSL 5 BASIC12.36□□□□□ -0.43
CLK1P49759 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC12.35□□□□□ -0.43
CLK1P49759 PTPRK-203ENST00000368207 4758 ntTSL 5 BASIC12.35□□□□□ -0.43
CLK1P49759 MAX-212ENST00000555932 1673 ntTSL 5 BASIC12.35□□□□□ -0.43
CLK1P49759 IGHG2-202ENST00000641095 2594 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
CLK1P49759 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CLK1P49759 OSBP2-203ENST00000403222 3728 ntTSL 5 BASIC12.35□□□□□ -0.43
CLK1P49759 AC024560.1-201ENST00000424493 1471 ntTSL 3 BASIC12.35□□□□□ -0.43
CLK1P49759 PTGR2-205ENST00000555661 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CLK1P49759 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CLK1P49759 POM121L6P-201ENST00000441186 1826 ntBASIC12.35□□□□□ -0.43
CLK1P49759 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC12.35□□□□□ -0.43
CLK1P49759 FAM102A-203ENST00000373095 4144 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
CLK1P49759 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CLK1P49759 OR2B11-202ENST00000641149 6414 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
CLK1P49759 PGGHG-203ENST00000409548 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CLK1P49759 SOX13-203ENST00000367204 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CLK1P49759 FGFR1OP-207ENST00000622353 3451 ntTSL 2 BASIC12.35□□□□□ -0.43
CLK1P49759 AC092506.1-202ENST00000401022 528 ntBASIC12.35□□□□□ -0.43
CLK1P49759 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CLK1P49759 RN7SKP109-201ENST00000410592 316 ntBASIC12.35□□□□□ -0.43
CLK1P49759 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC12.35□□□□□ -0.43
CLK1P49759 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 76.5 ms