Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 TRPV1-201ENST00000310522 2340 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
NPIPA3F8WFD2 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC11.92□□□□□ -0.5
NPIPA3F8WFD2 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
NPIPA3F8WFD2 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
NPIPA3F8WFD2 ZNF236-202ENST00000320610 7124 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NPIPA3F8WFD2 HSPA8P9-201ENST00000485881 1943 ntBASIC11.92□□□□□ -0.5
NPIPA3F8WFD2 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
NPIPA3F8WFD2 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 ARHGAP33-203ENST00000314737 3858 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 LAMP2-201ENST00000200639 1867 ntAPPRIS P5 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 SOX30-203ENST00000519442 1666 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC011239.2-201ENST00000624820 1489 ntBASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 BCCIP-202ENST00000299130 2337 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PCDHGA12-201ENST00000252085 4747 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AL356130.1-201ENST00000620188 1965 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC010677.1-201ENST00000441690 412 ntBASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 MARK2P17-201ENST00000498560 841 ntBASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 IGHVII-33-1-201ENST00000524010 280 ntBASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AP001102.1-201ENST00000528959 409 ntBASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AP002495.1-205ENST00000529513 655 ntAPPRIS ALT2 TSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PCTP-206ENST00000573500 919 ntTSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC012146.4-201ENST00000575546 271 ntBASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PHF23-213ENST00000613632 850 ntTSL 5 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC148477.9-201ENST00000623974 539 ntBASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 ZFAND1-201ENST00000220669 1798 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 ZFAND1-221ENST00000523096 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 TXNDC17-201ENST00000250101 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 TREH-202ENST00000397925 1718 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 BARD1-201ENST00000260947 5499 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 L3MBTL1-202ENST00000373134 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 ZNF606-204ENST00000547828 2680 ntTSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 ITGAX-201ENST00000268296 4703 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 VOPP1-206ENST00000428097 1671 ntTSL 3 BASIC11.91□□□□□ -0.5
NPIPA3F8WFD2 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 HAL-202ENST00000538703 2637 ntTSL 2 BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 NUP85-201ENST00000245544 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 AL359183.1-201ENST00000623796 2132 ntBASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 ACOX2-201ENST00000302819 2426 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 IL18BP-202ENST00000337131 1606 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 ATF4P4-201ENST00000393544 1930 ntBASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 AC104590.1-202ENST00000558368 1921 ntBASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 AC027612.1-201ENST00000445234 2395 ntBASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 SNORA30.1-201ENST00000363193 129 ntBASIC11.9□□□□□ -0.5
NPIPA3F8WFD2 SERF2-205ENST00000403425 690 ntTSL 2 BASIC11.9□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms