Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USP42Q9H9J4 AP004607.4-201ENST00000530158 1459 ntBASIC28.19■■■□□ 2.1
USP42Q9H9J4 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC28.19■■■□□ 2.1
USP42Q9H9J4 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
USP42Q9H9J4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP42Q9H9J4 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC28.18■■■□□ 2.1
USP42Q9H9J4 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC28.18■■■□□ 2.1
USP42Q9H9J4 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
USP42Q9H9J4 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC28.18■■■□□ 2.1
USP42Q9H9J4 AC104771.1-201ENST00000603335 964 ntBASIC28.18■■■□□ 2.1
USP42Q9H9J4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC28.18■■■□□ 2.1
USP42Q9H9J4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC28.18■■■□□ 2.1
USP42Q9H9J4 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USP42Q9H9J4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
USP42Q9H9J4 AC144652.1-201ENST00000609974 1624 ntBASIC28.18■■■□□ 2.1
USP42Q9H9J4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
USP42Q9H9J4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
USP42Q9H9J4 LINC01529-204ENST00000636474 1715 ntBASIC28.17■■■□□ 2.1
USP42Q9H9J4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC28.17■■■□□ 2.1
USP42Q9H9J4 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
USP42Q9H9J4 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC28.17■■■□□ 2.1
USP42Q9H9J4 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
USP42Q9H9J4 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP42Q9H9J4 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.17■■■□□ 2.1
USP42Q9H9J4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.17■■■□□ 2.1
USP42Q9H9J4 AC026185.1-201ENST00000445748 174 ntBASIC28.17■■■□□ 2.1
USP42Q9H9J4 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
USP42Q9H9J4 AC004854.2-201ENST00000608450 1441 ntBASIC28.16■■■□□ 2.1
USP42Q9H9J4 RARA-203ENST00000394086 2008 ntTSL 2 BASIC28.16■■■□□ 2.1
USP42Q9H9J4 COX20-201ENST00000366528 568 ntTSL 2 BASIC28.16■■■□□ 2.1
USP42Q9H9J4 PPP1R14BP3-201ENST00000509033 445 ntBASIC28.16■■■□□ 2.1
USP42Q9H9J4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP42Q9H9J4 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
USP42Q9H9J4 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
USP42Q9H9J4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
USP42Q9H9J4 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
USP42Q9H9J4 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC28.15■■■□□ 2.1
USP42Q9H9J4 MAP2K4P1-201ENST00000438453 1195 ntBASIC28.15■■■□□ 2.1
USP42Q9H9J4 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC28.15■■■□□ 2.1
USP42Q9H9J4 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP42Q9H9J4 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
USP42Q9H9J4 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP42Q9H9J4 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP42Q9H9J4 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.09
USP42Q9H9J4 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
USP42Q9H9J4 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC28.14■■■□□ 2.09
USP42Q9H9J4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC28.14■■■□□ 2.09
USP42Q9H9J4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC28.13■■■□□ 2.09
USP42Q9H9J4 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
USP42Q9H9J4 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP42Q9H9J4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP42Q9H9J4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC28.13■■■□□ 2.09
USP42Q9H9J4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.13■■■□□ 2.09
USP42Q9H9J4 BID-214ENST00000617586 542 ntTSL 5 BASIC28.13■■■□□ 2.09
USP42Q9H9J4 WWOX-218ENST00000627394 894 ntTSL 5 BASIC28.13■■■□□ 2.09
USP42Q9H9J4 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
USP42Q9H9J4 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP42Q9H9J4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
USP42Q9H9J4 ABHD17AP1-201ENST00000358206 933 ntBASIC28.12■■■□□ 2.09
USP42Q9H9J4 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP42Q9H9J4 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
USP42Q9H9J4 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
USP42Q9H9J4 CROCCP5-201ENST00000436658 830 ntBASIC28.12■■■□□ 2.09
USP42Q9H9J4 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC28.12■■■□□ 2.09
USP42Q9H9J4 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
USP42Q9H9J4 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC28.12■■■□□ 2.09
USP42Q9H9J4 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC28.12■■■□□ 2.09
USP42Q9H9J4 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP42Q9H9J4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USP42Q9H9J4 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP42Q9H9J4 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
USP42Q9H9J4 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP42Q9H9J4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP42Q9H9J4 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
USP42Q9H9J4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
USP42Q9H9J4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
USP42Q9H9J4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC28.11■■■□□ 2.09
USP42Q9H9J4 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP42Q9H9J4 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP42Q9H9J4 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP42Q9H9J4 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC28.1■■■□□ 2.09
USP42Q9H9J4 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC28.1■■■□□ 2.09
USP42Q9H9J4 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC28.1■■■□□ 2.09
USP42Q9H9J4 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC28.1■■■□□ 2.09
USP42Q9H9J4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC28.1■■■□□ 2.09
USP42Q9H9J4 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
USP42Q9H9J4 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
USP42Q9H9J4 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
USP42Q9H9J4 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
USP42Q9H9J4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
USP42Q9H9J4 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
USP42Q9H9J4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC28.09■■■□□ 2.09
USP42Q9H9J4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
USP42Q9H9J4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC28.09■■■□□ 2.09
USP42Q9H9J4 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC28.09■■■□□ 2.09
USP42Q9H9J4 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
USP42Q9H9J4 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
USP42Q9H9J4 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC28.08■■■□□ 2.09
USP42Q9H9J4 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
USP42Q9H9J4 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms