Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.18■□□□□ 0.82
TIMP4Q99727 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.18■□□□□ 0.82
TIMP4Q99727 GUSBP5-202ENST00000510805 1989 ntBASIC20.18■□□□□ 0.82
TIMP4Q99727 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TIMP4Q99727 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.18■□□□□ 0.82
TIMP4Q99727 AC091305.1-201ENST00000479476 895 ntBASIC20.18■□□□□ 0.82
TIMP4Q99727 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TIMP4Q99727 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.18■□□□□ 0.82
TIMP4Q99727 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TIMP4Q99727 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.18■□□□□ 0.82
TIMP4Q99727 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.17■□□□□ 0.82
TIMP4Q99727 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
TIMP4Q99727 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.17■□□□□ 0.82
TIMP4Q99727 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.17■□□□□ 0.82
TIMP4Q99727 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
TIMP4Q99727 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.17■□□□□ 0.82
TIMP4Q99727 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TIMP4Q99727 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
TIMP4Q99727 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.17■□□□□ 0.82
TIMP4Q99727 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.16■□□□□ 0.82
TIMP4Q99727 AC008764.7-201ENST00000593779 1081 ntBASIC20.16■□□□□ 0.82
TIMP4Q99727 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.16■□□□□ 0.82
TIMP4Q99727 RASA4CP-201ENST00000424092 1398 ntBASIC20.16■□□□□ 0.82
TIMP4Q99727 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TIMP4Q99727 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.15■□□□□ 0.82
TIMP4Q99727 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TIMP4Q99727 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TIMP4Q99727 AC105265.2-201ENST00000467189 838 ntBASIC20.15■□□□□ 0.82
TIMP4Q99727 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.15■□□□□ 0.82
TIMP4Q99727 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.15■□□□□ 0.82
TIMP4Q99727 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.15■□□□□ 0.82
TIMP4Q99727 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.15■□□□□ 0.82
TIMP4Q99727 AC027682.1-201ENST00000562846 899 ntBASIC20.15■□□□□ 0.82
TIMP4Q99727 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TIMP4Q99727 FP325331.1-202ENST00000623531 1380 ntBASIC20.15■□□□□ 0.82
TIMP4Q99727 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TIMP4Q99727 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TIMP4Q99727 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.15■□□□□ 0.82
TIMP4Q99727 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TIMP4Q99727 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.14■□□□□ 0.82
TIMP4Q99727 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
TIMP4Q99727 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
TIMP4Q99727 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TIMP4Q99727 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TIMP4Q99727 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.14■□□□□ 0.81
TIMP4Q99727 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.14■□□□□ 0.81
TIMP4Q99727 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TIMP4Q99727 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.14■□□□□ 0.81
TIMP4Q99727 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TIMP4Q99727 CA15P2-201ENST00000611168 834 ntBASIC20.14■□□□□ 0.81
TIMP4Q99727 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TIMP4Q99727 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.14■□□□□ 0.81
TIMP4Q99727 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TIMP4Q99727 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
TIMP4Q99727 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.13■□□□□ 0.81
TIMP4Q99727 ECEL1P1-201ENST00000373592 1742 ntBASIC20.13■□□□□ 0.81
TIMP4Q99727 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
TIMP4Q99727 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.13■□□□□ 0.81
TIMP4Q99727 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.13■□□□□ 0.81
TIMP4Q99727 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TIMP4Q99727 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
TIMP4Q99727 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TIMP4Q99727 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TIMP4Q99727 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
TIMP4Q99727 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TIMP4Q99727 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TIMP4Q99727 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.12■□□□□ 0.81
TIMP4Q99727 AC099791.1-201ENST00000416440 715 ntBASIC20.12■□□□□ 0.81
TIMP4Q99727 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms