Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
RTF1Q92541 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC28.77■■■□□ 2.2
RTF1Q92541 AL162430.1-201ENST00000480705 870 ntBASIC28.77■■■□□ 2.2
RTF1Q92541 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC28.77■■■□□ 2.2
RTF1Q92541 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC28.77■■■□□ 2.2
RTF1Q92541 AC092666.2-201ENST00000613287 246 ntBASIC28.77■■■□□ 2.2
RTF1Q92541 AC087239.1-201ENST00000622671 572 ntBASIC28.77■■■□□ 2.2
RTF1Q92541 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
RTF1Q92541 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC28.77■■■□□ 2.2
RTF1Q92541 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC28.76■■■□□ 2.2
RTF1Q92541 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC28.76■■■□□ 2.19
RTF1Q92541 AC123595.1-201ENST00000440769 1046 ntBASIC28.76■■■□□ 2.19
RTF1Q92541 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC28.76■■■□□ 2.19
RTF1Q92541 AC104564.3-201ENST00000582367 638 ntBASIC28.76■■■□□ 2.19
RTF1Q92541 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.19
RTF1Q92541 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC28.76■■■□□ 2.19
RTF1Q92541 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
RTF1Q92541 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC28.76■■■□□ 2.19
RTF1Q92541 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC28.75■■■□□ 2.19
RTF1Q92541 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC28.75■■■□□ 2.19
RTF1Q92541 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC28.75■■■□□ 2.19
RTF1Q92541 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC28.75■■■□□ 2.19
RTF1Q92541 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
RTF1Q92541 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC28.75■■■□□ 2.19
RTF1Q92541 AC034268.1-201ENST00000441047 882 ntBASIC28.75■■■□□ 2.19
RTF1Q92541 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
RTF1Q92541 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC28.75■■■□□ 2.19
RTF1Q92541 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC28.75■■■□□ 2.19
RTF1Q92541 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
RTF1Q92541 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.74■■■□□ 2.19
RTF1Q92541 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC28.74■■■□□ 2.19
RTF1Q92541 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC28.74■■■□□ 2.19
RTF1Q92541 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC28.74■■■□□ 2.19
RTF1Q92541 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC28.74■■■□□ 2.19
RTF1Q92541 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC28.74■■■□□ 2.19
RTF1Q92541 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC28.74■■■□□ 2.19
RTF1Q92541 PARL-206ENST00000435888 1098 ntTSL 5 BASIC28.74■■■□□ 2.19
RTF1Q92541 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC28.74■■■□□ 2.19
RTF1Q92541 AC010141.3-201ENST00000456659 717 ntBASIC28.74■■■□□ 2.19
RTF1Q92541 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC28.74■■■□□ 2.19
RTF1Q92541 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 RAB43-208ENST00000615093 783 ntTSL 5 BASIC28.74■■■□□ 2.19
RTF1Q92541 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
RTF1Q92541 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC28.74■■■□□ 2.19
RTF1Q92541 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC28.73■■■□□ 2.19
RTF1Q92541 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC28.73■■■□□ 2.19
RTF1Q92541 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC28.73■■■□□ 2.19
RTF1Q92541 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
RTF1Q92541 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
RTF1Q92541 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
RTF1Q92541 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
RTF1Q92541 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
RTF1Q92541 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
RTF1Q92541 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC28.72■■■□□ 2.19
RTF1Q92541 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC28.72■■■□□ 2.19
RTF1Q92541 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC28.72■■■□□ 2.19
RTF1Q92541 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC28.72■■■□□ 2.19
RTF1Q92541 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
RTF1Q92541 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
RTF1Q92541 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
RTF1Q92541 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
RTF1Q92541 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
RTF1Q92541 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
RTF1Q92541 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
RTF1Q92541 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC28.71■■■□□ 2.19
RTF1Q92541 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
RTF1Q92541 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
RTF1Q92541 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
RTF1Q92541 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
RTF1Q92541 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.18
RTF1Q92541 NT5C3AP1-201ENST00000394500 1012 ntBASIC28.7■■■□□ 2.18
RTF1Q92541 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.7■■■□□ 2.18
RTF1Q92541 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC28.7■■■□□ 2.18
RTF1Q92541 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC28.7■■■□□ 2.18
RTF1Q92541 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC28.69■■■□□ 2.18
RTF1Q92541 USP45-205ENST00000472914 1617 ntTSL 5 BASIC28.69■■■□□ 2.18
RTF1Q92541 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
RTF1Q92541 HACD1-201ENST00000326961 773 ntTSL 2 BASIC28.69■■■□□ 2.18
RTF1Q92541 MFF-208ENST00000409616 1247 ntTSL 5 BASIC28.69■■■□□ 2.18
RTF1Q92541 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC28.69■■■□□ 2.18
RTF1Q92541 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC28.69■■■□□ 2.18
RTF1Q92541 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC28.69■■■□□ 2.18
RTF1Q92541 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
RTF1Q92541 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RTF1Q92541 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
RTF1Q92541 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
RTF1Q92541 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RTF1Q92541 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
RTF1Q92541 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
RTF1Q92541 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
RTF1Q92541 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC28.68■■■□□ 2.18
RTF1Q92541 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
RTF1Q92541 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms