Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 SHD-204ENST00000599689 1729 ntTSL 5 BASIC22.17■■□□□ 1.14
HMGB4Q8WW32 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 AC020928.2-201ENST00000588717 2197 ntBASIC22.16■■□□□ 1.14
HMGB4Q8WW32 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB4Q8WW32 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 HLA-L-209ENST00000420110 1011 ntBASIC22.15■■□□□ 1.14
HMGB4Q8WW32 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB4Q8WW32 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 LINC01124-201ENST00000409786 2117 ntBASIC22.14■■□□□ 1.13
HMGB4Q8WW32 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 AC006015.1-201ENST00000429970 570 ntBASIC22.14■■□□□ 1.13
HMGB4Q8WW32 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 BX005040.4-201ENST00000637145 1518 ntBASIC22.14■■□□□ 1.13
HMGB4Q8WW32 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 AC004854.2-201ENST00000608450 1441 ntBASIC22.14■■□□□ 1.13
HMGB4Q8WW32 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB4Q8WW32 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 DENND3-207ENST00000518347 850 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 AC087239.1-201ENST00000622671 572 ntBASIC22.13■■□□□ 1.13
HMGB4Q8WW32 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGB4Q8WW32 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 TK2-208ENST00000545043 1120 ntTSL 2 BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 AC068587.7-201ENST00000641602 218 ntBASIC22.12■■□□□ 1.13
HMGB4Q8WW32 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
HMGB4Q8WW32 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 AP004607.4-201ENST00000530158 1459 ntBASIC22.11■■□□□ 1.13
HMGB4Q8WW32 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 AL353803.4-201ENST00000565882 1934 ntBASIC22.11■■□□□ 1.13
HMGB4Q8WW32 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
HMGB4Q8WW32 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 LINC00543-201ENST00000567234 1845 ntBASIC22.1■■□□□ 1.13
HMGB4Q8WW32 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
HMGB4Q8WW32 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB4Q8WW32 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB4Q8WW32 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB4Q8WW32 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.09■■□□□ 1.13
HMGB4Q8WW32 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
HMGB4Q8WW32 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms