Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.55■■□□□ 1.04
VRK3Q8IV63 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.55■■□□□ 1.04
VRK3Q8IV63 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK3Q8IV63 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK3Q8IV63 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.55■■□□□ 1.04
VRK3Q8IV63 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK3Q8IV63 LINC01960-201ENST00000563759 1884 ntBASIC21.55■■□□□ 1.04
VRK3Q8IV63 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
VRK3Q8IV63 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
VRK3Q8IV63 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 OR2I1P-207ENST00000453522 948 ntBASIC21.54■■□□□ 1.04
VRK3Q8IV63 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 AC106739.1-201ENST00000617035 715 ntBASIC21.54■■□□□ 1.04
VRK3Q8IV63 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.54■■□□□ 1.04
VRK3Q8IV63 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
VRK3Q8IV63 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VRK3Q8IV63 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
VRK3Q8IV63 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VRK3Q8IV63 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.53■■□□□ 1.04
VRK3Q8IV63 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.53■■□□□ 1.04
VRK3Q8IV63 SLC47A1P1-202ENST00000449666 945 ntBASIC21.53■■□□□ 1.04
VRK3Q8IV63 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.53■■□□□ 1.04
VRK3Q8IV63 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.53■■□□□ 1.04
VRK3Q8IV63 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.53■■□□□ 1.04
VRK3Q8IV63 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
VRK3Q8IV63 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VRK3Q8IV63 AC233723.2-201ENST00000623798 2106 ntBASIC21.53■■□□□ 1.04
VRK3Q8IV63 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
VRK3Q8IV63 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VRK3Q8IV63 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
VRK3Q8IV63 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
VRK3Q8IV63 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VRK3Q8IV63 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VRK3Q8IV63 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VRK3Q8IV63 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
VRK3Q8IV63 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.52■■□□□ 1.04
VRK3Q8IV63 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.52■■□□□ 1.04
VRK3Q8IV63 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
VRK3Q8IV63 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VRK3Q8IV63 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
VRK3Q8IV63 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VRK3Q8IV63 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
VRK3Q8IV63 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.51■■□□□ 1.03
VRK3Q8IV63 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.51■■□□□ 1.03
VRK3Q8IV63 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
VRK3Q8IV63 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VRK3Q8IV63 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.51■■□□□ 1.03
VRK3Q8IV63 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
VRK3Q8IV63 AL139246.5-201ENST00000606645 996 ntBASIC21.51■■□□□ 1.03
VRK3Q8IV63 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
VRK3Q8IV63 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VRK3Q8IV63 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
VRK3Q8IV63 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.5■■□□□ 1.03
VRK3Q8IV63 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
VRK3Q8IV63 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.5■■□□□ 1.03
VRK3Q8IV63 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.5■■□□□ 1.03
VRK3Q8IV63 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.5■■□□□ 1.03
VRK3Q8IV63 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VRK3Q8IV63 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VRK3Q8IV63 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VRK3Q8IV63 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.5■■□□□ 1.03
VRK3Q8IV63 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
VRK3Q8IV63 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
VRK3Q8IV63 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.49■■□□□ 1.03
VRK3Q8IV63 AL031602.1-201ENST00000633169 911 ntBASIC21.49■■□□□ 1.03
VRK3Q8IV63 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.49■■□□□ 1.03
VRK3Q8IV63 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.49■■□□□ 1.03
VRK3Q8IV63 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
VRK3Q8IV63 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VRK3Q8IV63 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
VRK3Q8IV63 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VRK3Q8IV63 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.48■■□□□ 1.03
VRK3Q8IV63 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VRK3Q8IV63 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
VRK3Q8IV63 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.48■■□□□ 1.03
VRK3Q8IV63 AL031432.3-201ENST00000607698 485 ntBASIC21.48■■□□□ 1.03
VRK3Q8IV63 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms