Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PPP4R4Q6NUP7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.95■□□□□ 0.94
PPP4R4Q6NUP7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PPP4R4Q6NUP7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PPP4R4Q6NUP7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 TSPY9P-201ENST00000440215 945 ntBASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 TSPY11P-201ENST00000442607 1045 ntBASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.92■□□□□ 0.94
PPP4R4Q6NUP7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 MIR4787-201ENST00000607364 84 ntBASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PPP4R4Q6NUP7 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 Z92544.1-202ENST00000571933 1220 ntBASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 AC026310.3-201ENST00000625186 2373 ntBASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
PPP4R4Q6NUP7 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.89■□□□□ 0.94
PPP4R4Q6NUP7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PPP4R4Q6NUP7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
PPP4R4Q6NUP7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PPP4R4Q6NUP7 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
PPP4R4Q6NUP7 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PPP4R4Q6NUP7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PPP4R4Q6NUP7 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 PKD1P6-201ENST00000343738 4769 ntBASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.88■□□□□ 0.93
PPP4R4Q6NUP7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms