Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 AL031432.3-201ENST00000607698 485 ntBASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
PTCHD3Q3KNS1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 AC092171.4-201ENST00000609130 632 ntBASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 AC004687.1-201ENST00000579003 1625 ntBASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PTCHD3Q3KNS1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.45■■□□□ 1.03
PTCHD3Q3KNS1 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
PTCHD3Q3KNS1 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 SERBP1P1-201ENST00000396021 1160 ntBASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 AC006455.2-201ENST00000429931 906 ntBASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 AL499627.2-201ENST00000606283 725 ntBASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 ESRRAP2-201ENST00000418437 1549 ntBASIC21.45■■□□□ 1.02
PTCHD3Q3KNS1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 AL117328.2-201ENST00000624617 1940 ntBASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PTCHD3Q3KNS1 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 EDA-201ENST00000338901 1233 ntBASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 SUDS3P1-201ENST00000505831 966 ntBASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PTCHD3Q3KNS1 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 AL355001.2-201ENST00000620617 1191 ntBASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
PTCHD3Q3KNS1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 ZNRF2P3-201ENST00000424200 374 ntBASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 AF213884.3-201ENST00000563833 479 ntBASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 MIR4767-201ENST00000582827 78 ntBASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 GUSBP5-202ENST00000510805 1989 ntBASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PTCHD3Q3KNS1 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.4■■□□□ 1.02
PTCHD3Q3KNS1 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms